View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9349_low_78 (Length: 238)
Name: NF9349_low_78
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_78 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1037952 - 1038174
Alignment:
| Q |
1 |
ataagtatttaaaatagcaggaagtgaaattccgccaggtattactatgggaaagactttaatgagaacaataaatagatgtctcaatatgcagtaacta |
100 |
Q |
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| T |
1037952 |
ataagtatttaaaatagcaggaagtgaaattccgccaggtattactatgggaaagactttaatgagaacaataaatagatgtctcaatatgcagtaacta |
1038051 |
T |
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| Q |
101 |
ttagaacttcaggcctggtataaaaataaacaggctacagagaacacgtgagatttgattatggagttcggcctattgttcctacgccgctgcatagtgg |
200 |
Q |
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| T |
1038052 |
ttagaacttcaggcctgttataaaaataaacaggctacagagaacacgtgagatttgattatggagttcggcctattgttcctacgccgctgcatagtgg |
1038151 |
T |
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| Q |
201 |
cggaagtacctttctattattca |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
1038152 |
cggaagtacctttctattattca |
1038174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 37 - 221
Target Start/End: Complemental strand, 14156159 - 14155975
Alignment:
| Q |
37 |
aggtattactatgggaaagactttaatgagaacaataaatagatgtctcaatatgcagtaactattagaacttcaggcctggtataaaaataaacaggct |
136 |
Q |
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|||||||| | |||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
14156159 |
aggtattattgtgggaaagacattaatgagaacaattaatagatgtctctatatgcagtaactattagaacttcaggcctgatacaaaaataaacagatc |
14156060 |
T |
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| Q |
137 |
acagagaacacgtgagatttgattatggagttcggcctattgttcctacgccgctgcatagtggcggaagtacctttctattatt |
221 |
Q |
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| T |
14156059 |
acagagaacacgcgagatttgatcatggagttcggcttattgttcctacgccgctgcatagtcgcggaagtacctttctattatt |
14155975 |
T |
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