View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9349_low_8 (Length: 479)
Name: NF9349_low_8
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 14 - 462
Target Start/End: Complemental strand, 7667171 - 7666723
Alignment:
| Q |
14 |
cattcttcatcttgatcttcaatatcatcataaatttttctatgatatattccttgtcagaaacagaagctttattaaatctaaaaaactcattctcaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7667171 |
cattcttcatcttgatcttcaatatcatcataaatttttctatgatatattccttgtcagaaacagaagctttattaaatctaaaaaactcattctcaaa |
7667072 |
T |
|
| Q |
114 |
tgctaatgctctaaatagttggtttgccaacactttaccttgtaccgaagacgatcaatgggaaggcgttgtttgttacaacggtcttgtaaccggtctg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7667071 |
tgctaatgctctaaatagttggtttgccaacactttaccttgtaccgaagacgatcaatgggaaggcgttgtttgttacaacggtcttgtaaccggtctg |
7666972 |
T |
|
| Q |
214 |
cgccttgaaggaatgggattattcggcaaaattgatgttgatgcattgcttgaacttaagggtttaagaactattagtcttatgaacaattctttcactg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
7666971 |
cgccttgaaggaatgggattattcggcaaaattgatgttgatgcattgcttgaacttaagggtttaagaactattagtttcatgaacaattctttcactg |
7666872 |
T |
|
| Q |
314 |
gttcgataccagaattgaatcgaatcggtttcttgaaagcgatgtttttgtcgggaaataaattttcaggacatattcctaaggaatattttcaaagaat |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7666871 |
gttcgataccagaattgaatcgaatcggtttcttgaaagcgatgtttttgtcgggaaataaattttcaggacatattcctaaggaatattttcaaagaat |
7666772 |
T |
|
| Q |
414 |
gaaatcattgaagaaagtttggttatctaataatgaatttacaggtgat |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7666771 |
gaaatcattgaagaaagtttggttatctaataatgaatttacaggtgat |
7666723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University