View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9349_low_83 (Length: 229)
Name: NF9349_low_83
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_83 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 38991187 - 38990959
Alignment:
| Q |
1 |
tcacagtgctgagaggttctggtattgtctctgacatcaccattcacaactcgttatcccataccccaccactcactattgaaggacctgtccaaatgac |
100 |
Q |
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| T |
38991187 |
tcacagtgctgagaggttttggtattgtctctgacatcaccattcacagctcgttatctcataccccaccactcactattgaaggacctgtccaaatgac |
38991088 |
T |
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| Q |
101 |
gtctctctctggcacttatgtcaatcccaatgttgataatgttccttctgaagtcattgccaaccctgcatgttcttcttttagcattttcctctctggt |
200 |
Q |
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| T |
38991087 |
gtctctctctggcacttatgtcaatcccaatgttgataatgttccttctgaagtcattgccaaccctgcatgttcttcttttagcattttcctctctggt |
38990988 |
T |
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| Q |
201 |
agtcatggtcaagtgtatggtggaattgt |
229 |
Q |
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| T |
38990987 |
agtcatggtcaagtgtatggtggaattgt |
38990959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 38954597 - 38954788
Alignment:
| Q |
10 |
tgagaggttctggtattgtctctgacatcaccattcacaactcgttatcccataccccaccactcactattgaaggacctgtccaaatgacgtctctctc |
109 |
Q |
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|||||||||| ||| |||||||| | || ||||| | |||||| ||| ||| |||| |||| |||||||||||||| || |||||| ||||||||| |
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| T |
38954597 |
tgagaggttccggtcttgtctctaatattaccatccgtaactcgacatctcattcccctgcactaactattgaaggacccatcaaaatgatgtctctctc |
38954696 |
T |
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| Q |
110 |
tggcacttatgtcaatcccaatgttgataatgttccttctgaagtcattgccaaccctgcatgttcttcttttagcattttcctctctggta |
201 |
Q |
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| T |
38954697 |
tggcacttacatcaatcccaattctgatactgttccttctgaattcatcaccaaccctaaccattcttcttttagcattttcctatctggta |
38954788 |
T |
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