View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9350_high_5 (Length: 249)

Name: NF9350_high_5
Description: NF9350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9350_high_5
NF9350_high_5
[»] chr8 (3 HSPs)
chr8 (1-247)||(43227215-43227461)
chr8 (130-218)||(42312844-42312932)
chr8 (140-193)||(16359879-16359932)
[»] chr7 (3 HSPs)
chr7 (155-221)||(11504531-11504597)
chr7 (150-213)||(18939807-18939870)
chr7 (175-221)||(40964716-40964762)
[»] scaffold0003 (2 HSPs)
scaffold0003 (157-247)||(35450-35540)
scaffold0003 (157-221)||(42120-42184)
[»] chr6 (4 HSPs)
chr6 (84-218)||(20909683-20909818)
chr6 (84-218)||(20924131-20924266)
chr6 (157-221)||(27445174-27445238)
chr6 (155-208)||(22081881-22081934)
[»] chr1 (1 HSPs)
chr1 (84-218)||(41326577-41326712)
[»] chr2 (1 HSPs)
chr2 (1-44)||(1615457-1615500)
[»] chr4 (2 HSPs)
chr4 (140-193)||(30180300-30180353)
chr4 (155-208)||(37618038-37618091)


Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 43227461 - 43227215
Alignment:
Q  1 cgtatgaattcaaaccaagccacaccaccatccataaaataaggnnnnnnntaacataattcatacatagccacaccaccatccataaaatctgataaag 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43227461 cgtatgaattcaaacctagccacaccaccatccataaaataaggaaaaaaataacataattcatacatagccacaccaccatccataaaatctgataaag 43227362  T
Q  101 taatataacataataacaaacatgctacgtcaagtaacatgtcttcaactatagagatatcttcctgtcaaacaacacttgattctaaaactcttgcttc 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43227361 taatataacataataacaaacacgctacgtcaagtaacatgtcttcaactatagagatatcttcctgtcaaagaacacttgattctaaaactcttgcttc 43227262  T
Q  201 atcctatggtagtagttttaannnnnnnaacatagaacaccaaactc 247  Q
    |||||||||||||||||||||       |||||||||||||||||||    
T  43227261 atcctatggtagtagttttaatttttttaacatagaacaccaaactc 43227215  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 42312844 - 42312932
Alignment:
Q  130 tcaagtaacatgtcttcaactatagagatatcttcctgtcaaacaacacttgattctaaaactcttgcttcatcctatggtagtagttt 218  Q
    |||||||| | |||||| | || ||||| ||||||||||| |||||||||||||||||| |||||||||||||| ||||| ||| ||||    
T  42312844 tcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaacacttgattctaatactcttgcttcatcgtatggcagtggttt 42312932  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 16359932 - 16359879
Alignment:
Q  140 tgtcttcaactatagagatatcttcctgtcaaacaacacttgattctaaaactc 193  Q
    |||||||  |||||||||||||||| | |||||||||| |||||||||||||||    
T  16359932 tgtcttcggctatagagatatcttcttttcaaacaacaattgattctaaaactc 16359879  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 11504597 - 11504531
Alignment:
Q  155 agatatcttcctgtcaaacaacacttgattctaaaactcttgcttcatcctatggtagtagttttaa 221  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  11504597 agatatcttcatgtcaaacaacacttgattctaaaactcttgcttcatcatatggtagtggttttaa 11504531  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 18939807 - 18939870
Alignment:
Q  150 tatagagatatcttcctgtcaaacaacacttgattctaaaactcttgcttcatcctatggtagt 213  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||| |||||| |||| ||||    
T  18939807 tataaagatatcttccttccaaacaacacttgattctaaaactcttgattcatcatatgttagt 18939870  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 40964762 - 40964716
Alignment:
Q  175 acacttgattctaaaactcttgcttcatcctatggtagtagttttaa 221  Q
    ||||||||||||||||||| ||||||||||||||||||  |||||||    
T  40964762 acacttgattctaaaactcatgcttcatcctatggtagatgttttaa 40964716  T

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Target: scaffold0003 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 247
Target Start/End: Original strand, 35450 - 35540
Alignment:
Q  157 atatcttcctgtcaaacaacacttgattctaaaactcttgcttcatcctatggtagtagttttaannnnnnnaacatagaacaccaaactc 247  Q
    ||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||||       |||||||||||||||||||    
T  35450 atatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaatttttttaacatagaacaccaaactc 35540  T

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Target: scaffold0003; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 42120 - 42184
Alignment:
Q  157 atatcttcctgtcaaacaacacttgattctaaaactcttgcttcatcctatggtagtagttttaa 221  Q
    ||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||||    
T  42120 atatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaa 42184  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 84 - 218
Target Start/End: Original strand, 20909683 - 20909818
Alignment:
Q  84 cataaaatctgataaagtaatataacataataacaaacatgcta-cgtcaagtaacatgtcttcaactatagagatatcttcctgtcaaacaacacttga 182  Q
    |||| ||| ||||||||||||||||||||| || |||||   |  | |||||||| | |||||| | || ||||| ||||||||||| ||||||||||||    
T  20909683 catagaatatgataaagtaatataacataacaataaacacagtggcatcaagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttga 20909782  T
Q  183 ttctaaaactcttgcttcatcctatggtagtagttt 218  Q
    ||||||||||||||||||||| ||||| ||| ||||    
T  20909783 ttctaaaactcttgcttcatcatatggcagtggttt 20909818  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 84 - 218
Target Start/End: Original strand, 20924131 - 20924266
Alignment:
Q  84 cataaaatctgataaagtaatataacataataacaaacatgcta-cgtcaagtaacatgtcttcaactatagagatatcttcctgtcaaacaacacttga 182  Q
    |||| ||| ||||||||||||||||||||| || |||||   |  | |||||||| | |||||| | || ||||| ||||||||||| ||||||||||||    
T  20924131 catagaatatgataaagtaatataacataacaataaacacagtggcatcaagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttga 20924230  T
Q  183 ttctaaaactcttgcttcatcctatggtagtagttt 218  Q
    ||||||||||||||||||||| ||||| ||| ||||    
T  20924231 ttctaaaactcttgcttcatcatatggcagtggttt 20924266  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 27445238 - 27445174
Alignment:
Q  157 atatcttcctgtcaaacaacacttgattctaaaactcttgcttcatcctatggtagtagttttaa 221  Q
    ||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||||    
T  27445238 atatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaa 27445174  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 22081934 - 22081881
Alignment:
Q  155 agatatcttcctgtcaaacaacacttgattctaaaactcttgcttcatcctatg 208  Q
    ||||| |||| ||||||||||| |||||||||||||||| | ||||||||||||    
T  22081934 agataacttcatgtcaaacaacgcttgattctaaaactcctacttcatcctatg 22081881  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 218
Target Start/End: Original strand, 41326577 - 41326712
Alignment:
Q  84 cataaaatctgataaagtaatataacataataacaaacatgcta-cgtcaagtaacatgtcttcaactatagagatatcttcctgtcaaacaacacttga 182  Q
    |||| ||| ||||||||||||||||||||| || |||||   |  | |||||||| | |||||| | || ||||| ||||||||||| ||||| ||||||    
T  41326577 catagaatatgataaagtaatataacataacaataaacacagtggcatcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaaaacttga 41326676  T
Q  183 ttctaaaactcttgcttcatcctatggtagtagttt 218  Q
    ||||||||||||||||||||| ||||| ||| ||||    
T  41326677 ttctaaaactcttgcttcatcatatggcagtggttt 41326712  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 1615457 - 1615500
Alignment:
Q  1 cgtatgaattcaaaccaagccacaccaccatccataaaataagg 44  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  1615457 cgtatgaattcaaacctagccacaccaccatccataaaataagg 1615500  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 30180353 - 30180300
Alignment:
Q  140 tgtcttcaactatagagatatcttcctgtcaaacaacacttgattctaaaactc 193  Q
    |||||||  |||||||||||||||| |||||||||||| |||||||||||||||    
T  30180353 tgtcttcggctatagagatatcttcttgtcaaacaacaattgattctaaaactc 30180300  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 37618038 - 37618091
Alignment:
Q  155 agatatcttcctgtcaaacaacacttgattctaaaactcttgcttcatcctatg 208  Q
    ||||| |||| ||||||||||| |||||||||||||||| | ||||||||||||    
T  37618038 agataacttcatgtcaaacaacgcttgattctaaaactccttcttcatcctatg 37618091  T

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