View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9350_low_11 (Length: 296)
Name: NF9350_low_11
Description: NF9350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9350_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 42779742 - 42780037
Alignment:
| Q |
1 |
aagccaaaatgtgccaccaccaaaaatggcaccaatagagacgcaaaaacgcagcagcacaaattcaaaagaatagaccacatattgctagcnnnnnnnn |
100 |
Q |
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| T |
42779742 |
aagccaaaatgtaccaccaccaaaaatggcaccaatagagacgcaaaaacgcagcagcacaaattcaaaagaatagaccacatattgctagcaaaaaaaa |
42779841 |
T |
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| Q |
101 |
gcaacaaattcaattttcttcactagaacaaaagccgcaaattcgaaccaatcattcaagaaaaaacgcaattatattcccaaatgttttgagaactcaa |
200 |
Q |
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| T |
42779842 |
gcaacaaattcaattttcttcactagaacaaaagccgcaaattcgaaccaatcattcaagaaaaaacgcaattatattcccaaatgttttgagaactcaa |
42779941 |
T |
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| Q |
201 |
taacggaaccgtagtttaagatggatcaaacaaagctcttgataccacgttaatagtctaggtttcaaagacaataacaaaacaacgacgatagct |
296 |
Q |
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| T |
42779942 |
taacggaaccgtagtttaagatggatcaaacaaagctcttgataccacgttaatagtctaggtttcaaagacaataacaaaacaacgacgatagct |
42780037 |
T |
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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 29554925 - 29554641
Alignment:
| Q |
1 |
aagccaaaatgtgccaccaccaaaaatggcaccaatagagacgcaaaaacgcagcagcacaaattcaaaagaatagaccacatattgctagc-nnnnnnn |
99 |
Q |
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| T |
29554925 |
aagccaaaacgtacaactaccgaaaatggcaccaatagtgacgcaaaa-ctcagcagcacaaattcaaaagaatagaccacatattgctaactgaacaaa |
29554827 |
T |
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| Q |
100 |
ngcaacaaattcaattttcttcactagaacaaaagccgcaaattcgaaccaatcattcaagaaaaaacgcaattatattcccaaatgttttgagaactca |
199 |
Q |
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| T |
29554826 |
agcaacagattaaattttcttcaacagaacaaaaaccgcaaattttaaccaatcatccaaaaaacaa------tgtattctaaaaaattttaggaactca |
29554733 |
T |
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| Q |
200 |
ataacgg------aaccgtagtttaagatggatcaaacaaagctcttgataccacgttaatagtctaggtttcaaagacaataacaaaacaa |
285 |
Q |
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|||| || |||||||||| ||| |||||| ||||||||| ||||||||| ||||| | ||||||||||| ||||||||||||||||| |
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| T |
29554732 |
ataatggaagtgaaaccgtagttcaaggtggatcgaacaaagcttttgataccatgttaacaatctaggtttcagagacaataacaaaacaa |
29554641 |
T |
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