View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9350_low_17 (Length: 240)
Name: NF9350_low_17
Description: NF9350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9350_low_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 42780411 - 42780189
Alignment:
| Q |
18 |
gatagtaatggagctgctacaagcaaagcaacgagtttnnnnnnnntgtcgcagggagcagtaagggaagaagtggaagaggaaaggggacaaatcgagc |
117 |
Q |
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| T |
42780411 |
gatagtaatggagctgctacaagcaaagcaacgagtttaaaaaaaatgtcgcagggagcagtaagggaagaagtggaagaggaaaggggacaaatcgagc |
42780312 |
T |
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| Q |
118 |
tacagtgtccagcataataactaatgataatgagtggtcttgtgagcaatgtacctatgcaaacgtcggatctgccactgcatgtgcgatgtgttgtgta |
217 |
Q |
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| T |
42780311 |
tacagtgtccagcataataactaatgataatgagtggtcttgtgagcaatgtacctatgcaaacgtcggatctgccactgcatgtgcgatgtgttgtgta |
42780212 |
T |
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| Q |
218 |
atcaacagtgtcaatgacccact |
240 |
Q |
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| T |
42780211 |
atcaacagtgtcaatgacccact |
42780189 |
T |
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Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 42194723 - 42194910
Alignment:
| Q |
18 |
gatagtaatggagctgctacaagcaaagcaacgagtttnnnnnnnntgtcgcagggagcagtaagggaagaagtggaagaggaaaggggacaaatcgagc |
117 |
Q |
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| T |
42194723 |
gatagtaatggagctgctacaagcaaagcaacgagtt--caaaaaatgcggcagggagcagtaaaggaaaaagcggaagaggaaaggggacgaa---agc |
42194817 |
T |
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| Q |
118 |
tacagtgtccagcataataactaatgataatgagtggtcttgtgagcaatgtacctatgcaaacgtcggatctgccactgcatgtgcgatgtg |
210 |
Q |
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| T |
42194818 |
taccgtgtccagcagattaactgatgataatgagtggtcttgtgagcaatgtacctatgcaaatgttggatctgccaccgcatgcgcgatgtg |
42194910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 210
Target Start/End: Original strand, 29554288 - 29554421
Alignment:
| Q |
68 |
gcagggagcagtaagggaagaagtggaagaggaaaggggacaaatcgagctacagtgtccagcataataactaatgataatgagtggtcttgtgagcaat |
167 |
Q |
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| T |
29554288 |
gcagggagcagtaagggaagaagcggaagaggaaaggggacgaatcgagctaccgtgt---------taacttatgataatgagtggtattgtgagcgat |
29554378 |
T |
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| Q |
168 |
gtacctatgcaaacgtcggatctgccactgcatgtgcgatgtg |
210 |
Q |
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| T |
29554379 |
gtacctatgcaaacgtcggatctgccactgaatgcgccatgtg |
29554421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 29539494 - 29539600
Alignment:
| Q |
92 |
ggaagaggaaaggggacaaatcgagctacagtgtccagcataataactaatgataatgagtggtcttgtgagcaatgtacctatgcaaacgtcggatctg |
191 |
Q |
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| T |
29539494 |
ggaagaggaaaggggacaaatcgagctaccgtgtccagcaaaataaccgttgataatgagtggtattgtgttgaatgtacctatgcaaacgtcggatctg |
29539593 |
T |
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| Q |
192 |
ccactgc |
198 |
Q |
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| T |
29539594 |
ccactgc |
29539600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 29539616 - 29539703
Alignment:
| Q |
148 |
tgagtggtcttgtgagcaatgtacctatgcaaacgtcggatctgccactgcatgtgcgatgtgttgtgtaatcaacagtgtcaatgacccact |
240 |
Q |
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| T |
29539616 |
tgagtggtcttgtgggcaatgtacctatgcaaacatcggatctgccacagcatgcgc-----ggtgtgcaatcaacagcgtcaatgacccact |
29539703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 29554424 - 29554487
Alignment:
| Q |
147 |
atgagtggtcttgtgagcaatgtacctatgcaaacgtcggatctgccactgcatgtgcgatgtg |
210 |
Q |
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| T |
29554424 |
atgagtggtcttgtgagaaatgcacgtatgcaaacgtcggatctgtcactgaatgcgtgatgtg |
29554487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 29539431 - 29539467
Alignment:
| Q |
18 |
gatagtaatggagctgctacaagcaaagcaacgagtt |
54 |
Q |
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| T |
29539431 |
gatagtaatggagctgctacgagcaaagcaaagagtt |
29539467 |
T |
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