View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9350_low_18 (Length: 225)

Name: NF9350_low_18
Description: NF9350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9350_low_18
NF9350_low_18
[»] chr1 (19 HSPs)
chr1 (1-225)||(3372509-3372733)
chr1 (42-225)||(3361537-3361720)
chr1 (43-102)||(2948497-2948556)
chr1 (43-102)||(3340450-3340509)
chr1 (43-102)||(3349324-3349383)
chr1 (41-224)||(4323141-4323324)
chr1 (45-101)||(9818941-9818997)
chr1 (156-219)||(2006279-2006342)
chr1 (41-104)||(4335031-4335094)
chr1 (42-95)||(3218548-3218601)
chr1 (41-93)||(6601786-6601838)
chr1 (156-219)||(2010377-2010440)
chr1 (148-219)||(2019596-2019667)
chr1 (156-218)||(3349208-3349270)
chr1 (52-102)||(3378676-3378726)
chr1 (156-218)||(6592646-6592708)
chr1 (156-225)||(3218665-3218734)
chr1 (156-225)||(6601898-6601967)
chr1 (41-113)||(6592534-6592606)
[»] chr4 (1 HSPs)
chr4 (58-219)||(21237360-21237521)
[»] chr2 (6 HSPs)
chr2 (42-225)||(39273868-39274051)
chr2 (41-225)||(20923296-20923480)
chr2 (47-225)||(20934279-20934457)
chr2 (156-224)||(20952824-20952892)
chr2 (41-194)||(20926926-20927079)
chr2 (41-101)||(20952941-20953001)
[»] chr5 (1 HSPs)
chr5 (43-225)||(17969680-17969862)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 3372733 - 3372509
Alignment:
Q  1 tcacatacacgaatgaggcaattttcattgtcggataacatgaacttgttgattggaccagaatgttgtaaaagtacatgatcaacaattctcaaaaact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3372733 tcacatacacgaatgaggcaattttcattgtcggataacatgaacttgttgattggaccagaatgttgtaaaagtacatgatcaacaattctcaaaaact 3372634  T
Q  101 tgttattgataacggaagtgtatttggaagctgcaacagagatgcaatgtttgttaaacacaagatttggtagtgtgtaccatttgttcctccagctgct 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3372633 tgttattgataactgaagtgtatttggaagctgcaacagagatgcaatgtttgttaaacacaagatttggtagtgtgtaccatttgttcctccagctgct 3372534  T
Q  201 ggataaaacacttgttctctctgct 225  Q
    ||||||||||||||||||| |||||    
T  3372533 ggataaaacacttgttctcactgct 3372509  T

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Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 42 - 225
Target Start/End: Complemental strand, 3361720 - 3361537
Alignment:
Q  42 gaacttgttgattggaccagaatgttgtaaaagtacatgatcaacaattctcaaaaacttgttattgataacggaagtgtatttggaagctgcaacagag 141  Q
    ||||||||||||||| ||| ||||  |||||||||||||||||||||||||||||||||||||||||||||| |||| || || |||| ||| | |||||    
T  3361720 gaacttgttgattggcccataatgaagtaaaagtacatgatcaacaattctcaaaaacttgttattgataaccgaagggtcttgggaatctgtatcagag 3361621  T
Q  142 atgcaatgtttgttaaacacaagatttggtagtgtgtaccatttgttcctccagctgctggataaaacacttgttctctctgct 225  Q
    ||||||||||| | ||| |||||||||||||| |||||||||||||| |||||  |||||||||||| |||||||||| |||||    
T  3361620 atgcaatgtttatcaaatacaagatttggtagcgtgtaccatttgttactccatttgctggataaaatacttgttctcactgct 3361537  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 2948497 - 2948556
Alignment:
Q  43 aacttgttgattggaccagaatgttgtaaaagtacatgatcaacaattctcaaaaacttg 102  Q
    |||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||    
T  2948497 aacttgttgattggcccagaatgaagtaaaagtacatgatcaacaattctcaaaaacttg 2948556  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 3340509 - 3340450
Alignment:
Q  43 aacttgttgattggaccagaatgttgtaaaagtacatgatcaacaattctcaaaaacttg 102  Q
    |||||||||||||| ||||||||  ||||||||||||||||||||||||| |||||||||    
T  3340509 aacttgttgattggcccagaatgaagtaaaagtacatgatcaacaattcttaaaaacttg 3340450  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 3349383 - 3349324
Alignment:
Q  43 aacttgttgattggaccagaatgttgtaaaagtacatgatcaacaattctcaaaaacttg 102  Q
    |||||||||||| | ||||||||  |||||||||||||||||| ||||||||||||||||    
T  3349383 aacttgttgattagcccagaatgaagtaaaagtacatgatcaataattctcaaaaacttg 3349324  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 224
Target Start/End: Original strand, 4323141 - 4323324
Alignment:
Q  41 tgaacttgttgattggaccagaatgttgtaaaagtacatgatcaacaattctcaaaaacttgttattgataacggaagtgtatttggaagctgcaacaga 140  Q
    ||||| |||||||||| ||||||||  ||||||||||||||||||| ||| || ||||||||   |  |||||  ||| || || ||||||| || ||||    
T  4323141 tgaacatgttgattggcccagaatgaagtaaaagtacatgatcaaccattttcgaaaacttgggctcaataactaaagggtcttgggaagcttcagcaga 4323240  T
Q  141 gatgcaatgtttgttaaacacaagatttggtagtgtgtaccatttgttcctccagctgctggataaaacacttgttctctctgc 224  Q
     |  || ||| | | || |||||||||||| ||||| |||||||| ||||||||  | || || ||||||||||||||| ||||    
T  4323241 cacacattgtctatcaagcacaagatttggaagtgtataccattttttcctccaattcctcgacaaaacacttgttctcactgc 4323324  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 9818941 - 9818997
Alignment:
Q  45 cttgttgattggaccagaatgttgtaaaagtacatgatcaacaattctcaaaaactt 101  Q
    |||||||||||| || |||||  |||||||||||||||||| |||||||||||||||    
T  9818941 cttgttgattggcccggaatgaagtaaaagtacatgatcaataattctcaaaaactt 9818997  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 2006342 - 2006279
Alignment:
Q  156 aaacacaagatttggtagtgtgtaccatttgttcctccagctgctggataaaacacttgttctc 219  Q
    ||||||||||||||||| ||||  |||||||| ||||||  || ||||||||||||||||||||    
T  2006342 aaacacaagatttggtattgtggcccatttgtacctccatttgttggataaaacacttgttctc 2006279  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 4335031 - 4335094
Alignment:
Q  41 tgaacttgttgattggaccagaatgttgtaaaagtacatgatcaacaattctcaaaaacttgtt 104  Q
    ||||| |||||||||| ||||||||   ||||||||||||||||||||||  ||||||||||||    
T  4335031 tgaacatgttgattggtccagaatgaactaaaagtacatgatcaacaatttgcaaaaacttgtt 4335094  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 3218548 - 3218601
Alignment:
Q  42 gaacttgttgattggaccagaatgttgtaaaagtacatgatcaacaattctcaa 95  Q
    |||||||||||| || ||||||||  ||| ||||||||||||||||||||||||    
T  3218548 gaacttgttgatcggtccagaatgaagtagaagtacatgatcaacaattctcaa 3218601  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 6601786 - 6601838
Alignment:
Q  41 tgaacttgttgattggaccagaatgttgtaaaagtacatgatcaacaattctc 93  Q
    ||||||| |||||||| ||||||||  |||||||||||||||||| |||||||    
T  6601786 tgaactttttgattggcccagaatggagtaaaagtacatgatcaataattctc 6601838  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 2010440 - 2010377
Alignment:
Q  156 aaacacaagatttggtagtgtgtaccatttgttcctccagctgctggataaaacacttgttctc 219  Q
    ||||||||||||||||| ||||  |||||||| ||||||  || || |||||||||||||||||    
T  2010440 aaacacaagatttggtattgtggtccatttgtacctccatttgttgcataaaacacttgttctc 2010377  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 2019667 - 2019596
Alignment:
Q  148 tgtttgttaaacacaagatttggtagtgtgtaccatttgttcctccagctgctggataaaacacttgttctc 219  Q
    ||||| ||||| ||||||||||| | ||||  |||||||| ||||||  || ||||||||||||||||||||    
T  2019667 tgtttattaaatacaagatttggcattgtggcccatttgtacctccatttgttggataaaacacttgttctc 2019596  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 3349270 - 3349208
Alignment:
Q  156 aaacacaagatttggtagtgtgtaccatttgttcctccagctgctggataaaacacttgttct 218  Q
    ||||||||||| |||||||||| ||||||| ||||||||   ||| ||||| |||||||||||    
T  3349270 aaacacaagatctggtagtgtggaccatttcttcctccattcgctcgataacacacttgttct 3349208  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 3378726 - 3378676
Alignment:
Q  52 attggaccagaatgttgtaaaagtacatgatcaacaattctcaaaaacttg 102  Q
    ||||| ||||||||  |||||||||||||||| | ||||||||||||||||    
T  3378726 attggcccagaatgaagtaaaagtacatgatcgataattctcaaaaacttg 3378676  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 6592646 - 6592708
Alignment:
Q  156 aaacacaagatttggtagtgtgtaccatttgttcctccagctgctggataaaacacttgttct 218  Q
    ||||||||||||||| ||||||  |||||||| ||||||| || | ||||||| |||||||||    
T  6592646 aaacacaagatttggaagtgtggtccatttgtacctccagttggtagataaaatacttgttct 6592708  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 3218665 - 3218734
Alignment:
Q  156 aaacacaagatttggtagtgtgtaccatttgttcctccagctgctggataaaacacttgttctctctgct 225  Q
    |||||||| |||||||||||||| |||||| ||||||||    ||||| |||||||||||| || |||||    
T  3218665 aaacacaatatttggtagtgtgtgccatttattcctccattcactggacaaaacacttgttttcactgct 3218734  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 6601898 - 6601967
Alignment:
Q  156 aaacacaagatttggtagtgtgtaccatttgttcctccagctgctggataaaacacttgttctctctgct 225  Q
    ||||||||||||||| ||||||  |||||||| ||||||  || | ||||||| |||||||||| |||||    
T  6601898 aaacacaagatttggaagtgtggcccatttgtacctccatttggttgataaaatacttgttctcactgct 6601967  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 6592534 - 6592606
Alignment:
Q  41 tgaacttgttgattggaccagaatgttgtaaaagtacatgatcaacaattctcaaaaacttgttattgataac 113  Q
    ||||||| |||||||| |||||| |  |||||||||||||||||| ||||||  ||| |||| | ||||||||    
T  6592534 tgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataac 6592606  T

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Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 58 - 219
Target Start/End: Complemental strand, 21237521 - 21237360
Alignment:
Q  58 ccagaatgttgtaaaagtacatgatcaacaattctcaaaaacttgttattgataacggaagtgtatttggaagctgcaacagagatgcaatgtttgttaa 157  Q
    ||||||||  ||| |||||||||||||||||||||||||||||||||| ||||| | |||| || ||   ||| |||| ||||||  |||||||| |  |    
T  21237521 ccagaatgaagtagaagtacatgatcaacaattctcaaaaacttgttactgatacctgaagggtcttgaaaagttgcatcagagacacaatgtttatcga 21237422  T
Q  158 acacaagatttggtagtgtgtaccatttgttcctccagctgctggataaaacacttgttctc 219  Q
    ||||||||||||| |  |||||||||||||| |||||  |||||||||| ||||||||||||    
T  21237421 acacaagatttggcatagtgtaccatttgtttctccatttgctggataatacacttgttctc 21237360  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 225
Target Start/End: Complemental strand, 39274051 - 39273868
Alignment:
Q  42 gaacttgttgattggaccagaatgttgtaaaagtacatgatcaacaattctcaaaaacttgttattgataacggaagtgtatttggaagctgcaacagag 141  Q
    |||||||||||| || ||||| ||  ||||||||||||||||||||||| |||||| |||||| |  ||| |  ||| || || |||| ||  | |||||    
T  39274051 gaacttgttgataggtccagagtgaagtaaaagtacatgatcaacaattttcaaaagcttgttctcaatatctaaagggtcttgggaacctctagcagag 39273952  T
Q  142 atgcaatgtttgttaaacacaagatttggtagtgtgtaccatttgttcctccagctgctggataaaacacttgttctctctgct 225  Q
    |  ||| || | | |||||||||||||||||||||||||||||||| ||||||   |||||| ||||||||||||||| |||||    
T  39273951 acacaacgtctatcaaacacaagatttggtagtgtgtaccatttgtacctccattggctggacaaaacacttgttctcactgct 39273868  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 41 - 225
Target Start/End: Complemental strand, 20923480 - 20923296
Alignment:
Q  41 tgaacttgttgattggaccagaatgttgtaaaagtacatgatcaacaattctcaaaaacttgttattgataacggaagtgtatttggaagctgcaacaga 140  Q
    |||||||||||||||| ||||||||  ||||||||||||| |||||| | |||| ||||||||| | |||||| ||||  | || |||| ||||| ||||    
T  20923480 tgaacttgttgattggcccagaatgaagtaaaagtacatggtcaacagtcctcacaaacttgttctcgataacagaaggatcttcggaaactgcagcaga 20923381  T
Q  141 gatgcaatgtttgttaaacacaagatttggtagtgtgtaccatttgttcctccagctgctggataaaacacttgttctctctgct 225  Q
     |  || ||||| |  ||||||||||  ||| ||||| ||||||| ||||||||  || | |||||||||||||||||| |||||    
T  20923380 tacacattgtttatcgaacacaagatccggttgtgtggaccattttttcctccatttgttagataaaacacttgttctccctgct 20923296  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 47 - 225
Target Start/End: Complemental strand, 20934457 - 20934279
Alignment:
Q  47 tgttgattggaccagaatgttgtaaaagtacatgatcaacaattctcaaaaacttgttattgataacggaagtgtatttggaagctgcaacagagatgca 146  Q
    |||||||||| |||||||| ||||||||||||  || ||||||| ||||||| ||  | |  |||||  | |||| || | |||||||| ||||||  ||    
T  20934457 tgttgattggcccagaatgatgtaaaagtacactattaacaattttcaaaaatttcatctgaataactaacgtgtcttcgtaagctgcagcagagagaca 20934358  T
Q  147 atgtttgttaaacacaagatttggtagtgtgtaccatttgttcctccagctgctggataaaacacttgttctctctgct 225  Q
     ||| | | ||||||||||||||| |||||||||||||||||||||||  |  | |||||||||||||||||| |||||    
T  20934357 ttgtctatcaaacacaagatttgggagtgtgtaccatttgttcctccattttttagataaaacacttgttctcactgct 20934279  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 20952892 - 20952824
Alignment:
Q  156 aaacacaagatttggtagtgtgtaccatttgttcctccagctgctggataaaacacttgttctctctgc 224  Q
    ||||||||||||||| ||||||| |||||||||||||||  | || |||||||||||||||||| ||||    
T  20952892 aaacacaagatttggaagtgtgttccatttgttcctccattttctagataaaacacttgttctcactgc 20952824  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 194
Target Start/End: Complemental strand, 20927079 - 20926926
Alignment:
Q  41 tgaacttgttgattggaccagaatgttgtaaaagtacatgatcaacaattctcaaaaacttgttattgataacggaagtgtatttggaagctgcaacaga 140  Q
    ||||| |||||||||| ||| ||||  ||||||| ||||||||| ||| | ||||||||||  ||  ||||||  |   || ||||||||||||| ||||    
T  20927079 tgaacatgttgattggcccataatgaagtaaaaggacatgatcagcaaatttcaaaaacttcctagcgataactaacaggtctttggaagctgcagcaga 20926980  T
Q  141 gatgcaatgtttgttaaacacaagatttggtagtgtgtaccatttgttcctcca 194  Q
    ||  || ||  | | ||| |||||||||||||||||||||| ||||||||||||    
T  20926979 gacacattgactatcaaagacaagatttggtagtgtgtaccctttgttcctcca 20926926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 20953001 - 20952941
Alignment:
Q  41 tgaacttgttgattggaccagaatgttgtaaaagtacatgatcaacaattctcaaaaactt 101  Q
    ||||| |||||||||| ||||||||  ||||||||||||||||||||||| |||| |||||    
T  20953001 tgaacatgttgattggcccagaatgaagtaaaagtacatgatcaacaattttcaataactt 20952941  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 225
Target Start/End: Complemental strand, 17969862 - 17969680
Alignment:
Q  43 aacttgttgattggaccagaatgttgtaaaagtacatgatcaacaattctcaaaaacttgttattgataacggaagtgtatttggaagctgcaacagaga 142  Q
    |||||||||||||| || |||||  ||||||||||||||||||  |||||||||||||||   | |||||| |||  || || ||||||| ||  ||| |    
T  17969862 aacttgttgattggccctgaatgaagtaaaagtacatgatcaatgattctcaaaaacttgccctcgataactgaaaagtcttcggaagctacagtagata 17969763  T
Q  143 tgcaatgtttgttaaacacaagatttggtagtgtgtaccatttgttcctccagctgctggataaaacacttgttctctctgct 225  Q
      || ||| | | ||||||||||| |||| | ||  ||||||| ||| ||||  |||| |||||||||||||||||| |||||    
T  17969762 cacattgtctatcaaacacaagatctggttgggtagaccatttcttcttccatttgctcgataaaacacttgttctccctgct 17969680  T

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