View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9350_low_3 (Length: 378)
Name: NF9350_low_3
Description: NF9350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9350_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 341
Target Start/End: Original strand, 42950977 - 42951301
Alignment:
| Q |
16 |
agtggtgaaaatgtttgatcatggctggatccttgtggtgccaagatatttgcatttcagattaaatttcagtggagcgttggatttggcggctgttttt |
115 |
Q |
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| T |
42950977 |
agtggtgtaaatgtttg-tcatggctggatccttgtggtgccaagatatttgcatttcagattaaatttcagtggagcgttggatttggcggctgttttt |
42951075 |
T |
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| Q |
116 |
ggtaacacagttggaattatcacccactgtattttgtgtatgttccaaatttacaggttttgctcagctagaacgtgaattacattgtcactgcacattg |
215 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42951076 |
ggtaacacagttggaattatcatccactgtattttgtgtatgttctaaatttacaagttttgctcagctagaacgtgaattacattgtcactgcacattg |
42951175 |
T |
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| Q |
216 |
agaatgtctcaactattgttacgttgaactgttagcaatactggttagataaataaatttctgagttagttttgttttttaagtaatcaatgtacaactc |
315 |
Q |
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| T |
42951176 |
agaatgtctcaactattgttacgttgaactgttggcaatactggttagataaataaatttctgagttagttttgttttttaagtaatcaatgtacaactc |
42951275 |
T |
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| Q |
316 |
ctcaaaaagtaatcatgtacaatgaa |
341 |
Q |
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| T |
42951276 |
ctcaaaaagtaatcatgtacaatgaa |
42951301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 74 - 341
Target Start/End: Original strand, 2852651 - 2852930
Alignment:
| Q |
74 |
agattaaatttcagtggagcgttggatttggcggctgtttttggtaacacagt--tggaattatcacccactgtattttgtgtatgttccaaatttacag |
171 |
Q |
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| T |
2852651 |
agattaattttcagtggggcgttggatttggcggctgtttttggtaacaatgtgctagaattatcacacactgttattt-tgtttgtactaaatttacag |
2852749 |
T |
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| Q |
172 |
gttttgctcagctagaacgtgaattacattgtcactgcacattgagaatgtctcaactattgttacgttgaactgttagcaatac-----------tggt |
260 |
Q |
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| T |
2852750 |
gttttgctcagctagaacttgaattacatagtcactgcacattgagaatgtctcaactattgttacactgaactgttagcaatacttgttggcaaatggt |
2852849 |
T |
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| Q |
261 |
tagataaataaatttctgagttagttttgttttttaagtaatcaatgtacaactcctcaaaaagtaatcatgtacaatgaa |
341 |
Q |
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| T |
2852850 |
tagagaaataaatttctgtgttagttttgttttttaagtaatcaatgtacaactcctccaaaagtaatcatgtacaatgaa |
2852930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 74 - 341
Target Start/End: Original strand, 2904683 - 2904962
Alignment:
| Q |
74 |
agattaaatttcagtggagcgttggatttggcggctgtttttggtaacac--agttggaattatcacccactgtattttgtgtatgttccaaatttacag |
171 |
Q |
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||||||| ||||||||| ||||||||||||||||||||||||||||||| || | |||||||||| |||||| ||| ||| ||| | |||||||||| |
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| T |
2904683 |
agattaactttcagtggggcgttggatttggcggctgtttttggtaacaatgagctagaattatcacacactgttattt-tgtttgtactaaatttacag |
2904781 |
T |
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| Q |
172 |
gttttgctcagctagaacgtgaattacattgtcactgcacattgagaatgtctcaactattgttacgttgaactgttagcaatac-----------tggt |
260 |
Q |
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| T |
2904782 |
gttttgctcagctagaacttgaattacatagtcactgcacattgagaatgtctcaactattgttacactgaactgttagcaatacttgttggcaaatggt |
2904881 |
T |
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| Q |
261 |
tagataaataaatttctgagttagttttgttttttaagtaatcaatgtacaactcctcaaaaagtaatcatgtacaatgaa |
341 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2904882 |
tagagaaataaatttctgtgttagttttgttttttaagtaatcaatgtacaactcctccaaaagtaatcatgtacaatgaa |
2904962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 1179627 - 1179694
Alignment:
| Q |
16 |
agtggtgaaaatgtttgatcatggctggatccttgtggtgccaagatatttgcatttcagattaaatt |
83 |
Q |
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||||||||| |||| || ||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1179627 |
agtggtgaagatgtatggtcactgctggatccttgtggtgctgggatatttgcatttcagattaaatt |
1179694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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