View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9350_low_6 (Length: 355)
Name: NF9350_low_6
Description: NF9350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9350_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 3908076 - 3907770
Alignment:
| Q |
19 |
ttaccagttaagagctccaaaaggataacaccgaggctgtaaacgtctgtctttgtggtaggtttctttgtctttgaaagctccggtgcattgtatccga |
118 |
Q |
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| T |
3908076 |
ttaccagttaaaagctccaaaagaatgacgccgagactgtaaacatcggtttttgtggtaggtttctttgtctttgaaagctccggtgcattgtatccaa |
3907977 |
T |
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| Q |
119 |
gacttcctgctgtagcaatgatgttggtgttggcagaagttgtcattagtcttgaaagaccaaaatctatgatgtgagggtttgtttgctcatccaatag |
218 |
Q |
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| T |
3907976 |
gacttcctgctgtagcaatgatgttggtgttggcagaagttgtcattagtcttgaaagaccaaaatctgtgatgtgaggatttgtttgctcatccaatag |
3907877 |
T |
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| Q |
219 |
tatgttacttgaggtgagatttccctgtactatattctcttgattgtggaggcaagagagaccatttgtgattccaattgctattttcatccttgttggc |
318 |
Q |
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| T |
3907876 |
tatgttgcttgaggtgagattcccatgaactatattctcttggttgtgtaagcaaaatagaccattagtgattccaatagctattttcatccttgttggc |
3907777 |
T |
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| Q |
319 |
cattcga |
325 |
Q |
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||||||| |
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| T |
3907776 |
cattcga |
3907770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 4222804 - 4222949
Alignment:
| Q |
19 |
ttaccagttaagagctccaaaaggataacaccgaggctgtaaacgtctgtctttgtggtaggtttctttgtctttgaaagctccggtgcattgtatccga |
118 |
Q |
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||||||||||| | |||||||||||||||| | |||||||| | ||| ||||||||||||||||||| || ||| ||| ||||||||||| || | |
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| T |
4222804 |
ttaccagttaaaatctccaaaaggataacaa--aagctgtaaatatgggtcgttgtggtaggtttctttgtggttaaaatctctggtgcattgtagccaa |
4222901 |
T |
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| Q |
119 |
gacttcctgctgtagcaatgatgttggtgttggcagaagttgtcatta |
166 |
Q |
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|| ||||| | ||||||||| ||| ||||||| ||||||||||||| |
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| T |
4222902 |
gagttccttttatagcaatgacgtttttgttggctgaagttgtcatta |
4222949 |
T |
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