View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9350_low_9 (Length: 325)
Name: NF9350_low_9
Description: NF9350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9350_low_9 |
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| [»] scaffold0316 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 7949320 - 7949007
Alignment:
| Q |
1 |
gagctctcaagggcttcaacccaaaagagttcaagtctaaccgatgttttagaatcgaaccggacatagaactggcgaaacctcagggttatggttcaac |
100 |
Q |
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| T |
7949320 |
gagctctcaagggcttcaacctaaaagagttcaagtctaaccgatgttttagaatcgaaccggacatagaactggcgaaacctcagggttatggttcaac |
7949221 |
T |
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| Q |
101 |
cgcttcaaaccaccaccaaactgctcgaataactgaaccatatatagtgccggctaatggttcaaccgttgggttcagttagatttttaaaacattgatt |
200 |
Q |
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| T |
7949220 |
cgcttcaaaccaccaccaaacttctcgaataactgaaccatatatagtgccggctaatggttcaaccgtcgggttcagttagatttttaaaacattgatt |
7949121 |
T |
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| Q |
201 |
ctaacatctttccaagatgacatggtatggttataatctgtgaagcacaaatactcatcgtattaggcgtgtcctggtgttggatacaaatcatgtccga |
300 |
Q |
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| T |
7949120 |
ctaacatctttccaagatgacatggtatggttataatctctgaagcacaaatactcatcgtattaggtgtgtcctggtgttggatacaaatcatgtccga |
7949021 |
T |
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| Q |
301 |
cacgactccgacac |
314 |
Q |
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| T |
7949020 |
cacgactctgacac |
7949007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 38078594 - 38078645
Alignment:
| Q |
231 |
ttataatctgtgaagcacaaatactcatcgtattaggcgtgtcctggtgttg |
282 |
Q |
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| T |
38078594 |
ttatattctatgaagcacgaatactcctcggattaggcgtgtcctggtgttg |
38078645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0316 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 287
Target Start/End: Complemental strand, 16261 - 16215
Alignment:
| Q |
241 |
tgaagcacaaatactcatcgtattaggcgtgtcctggtgttggatac |
287 |
Q |
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| T |
16261 |
tgaagcacaaatactaatcggattagacgtgtcccggtgttggatac |
16215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 44067631 - 44067566
Alignment:
| Q |
253 |
actcatcgtattaggcgtgtcctggtgttggatacaaatca-tgtccgacacgactccgacacgac |
317 |
Q |
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| T |
44067631 |
actcctcgaattaggcgtgtcctggtgtcggacacgcatcagtgtccgacacgacaccgacacgac |
44067566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 28819328 - 28819256
Alignment:
| Q |
231 |
ttataatctgtgaagcacaaatactcatcgtattaggcgtgtcctggtgttggatacaaatcatgtccgacac |
303 |
Q |
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| T |
28819328 |
ttatgatctatgaagcacatatactcctcggattagccgtgttccggtgttggatacatatcgtgtctgacac |
28819256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 21138955 - 21139007
Alignment:
| Q |
262 |
attaggcgtgtcctggtgttggatacaaatcatgtccgacacgactccgacac |
314 |
Q |
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| T |
21138955 |
attaagcgtgtcctggtgtcggacacgtatcatgtccgacacgacaccgacac |
21139007 |
T |
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