View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9351_high_11 (Length: 226)
Name: NF9351_high_11
Description: NF9351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9351_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 40243746 - 40243551
Alignment:
| Q |
15 |
agaacaagcaaaatctcttagtttgtggaacaaaccaaaaatgcatgagtgttctatttgtggtatgggattctctttgggtcaagcattaggaggacac |
114 |
Q |
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| T |
40243746 |
agaacaagcaaaatctcttagtttgtggaacaaaccaaaaatgcatgagtgttctatttgtggtatgggattctctttgggtcaagcattaggaggacac |
40243647 |
T |
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| Q |
115 |
atgagaaagcatagagctgttataaatgaaggggtttcttccatcaatcaaattattgaaaaatttccagttttgaagagattgaatagtaagagg |
210 |
Q |
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| T |
40243646 |
atgagaaaacatagagctgttataaatgaaggggtttcttccatcaatcaaattattgaaaaatttccagttttgaagagattgaatagtaagagg |
40243551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 204
Target Start/End: Complemental strand, 40238027 - 40237914
Alignment:
| Q |
91 |
ttgggtcaagcattaggaggacacatgagaaagcatagagctgttataaatgaaggggtttcttccatcaatcaaattattgaaaaatttccagttttga |
190 |
Q |
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| T |
40238027 |
ttggggcaagcattgggtggacacatgagaaggcataaagctattatgaacgaagaggtttcttcaatggaacaagttgttatgaaattaccagttttaa |
40237928 |
T |
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| Q |
191 |
agagattgaatagt |
204 |
Q |
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| T |
40237927 |
agagattgaatagt |
40237914 |
T |
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