View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9351_low_10 (Length: 386)
Name: NF9351_low_10
Description: NF9351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9351_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 32095693 - 32096064
Alignment:
| Q |
1 |
acgtaaacgaccttgaaattcagagagccgtcatgttgccacaatattaggataaattaaatgtaaccnnnnnnnn-tatcaggataaattaaaataata |
99 |
Q |
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| T |
32095693 |
acgtaaacaaccttgaaattcagagagccatcatgttgccacaatattaggataaattaaatgtaaccaaaaaaaaatatcaggataaattaaaataata |
32095792 |
T |
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| Q |
100 |
aatgagtaaccctacannnnnnnnnnnatcaaagaatatgacaagcaatcaatcctattcatcgttcagattctatggctttggacgccagaagctcttc |
199 |
Q |
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| T |
32095793 |
aatgagtaaccctacatttttttttttatcaaataatatgacaagcaatcaatcctattcatggttcagattctatggctttggacgccagaagctcttc |
32095892 |
T |
|
| Q |
200 |
ctaccaacaagaaattgattttgataagatgtcacagaccaatgaagtgaattcaatattgcacccaactttctaattgcttccattgaatcctgaacca |
299 |
Q |
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| T |
32095893 |
ctaccaacaagaaattgattttgataagatgtcacagaccaatgaagtgaattcaatattgcacccaactttctaattgcttccattgaatcctgaacca |
32095992 |
T |
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| Q |
300 |
agagatacccatctggtctcaatatgcgatctatttccacaaccacatctacaatgtcacatctgaaaaaac |
371 |
Q |
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| T |
32095993 |
agagatacccatctggtctcaatatgcgatctatttccacaaccacatctacaatgtcacatctgaaaaaac |
32096064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 353
Target Start/End: Complemental strand, 35881800 - 35881727
Alignment:
| Q |
280 |
ttccattgaatcctgaaccaagagatacccatctggtctcaatatgcgatctatttccacaaccacatctacaa |
353 |
Q |
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| T |
35881800 |
ttccatggaatcatgaatcacaagatatccatctggtctcaatatgcgatctatctccacgatcacatctacaa |
35881727 |
T |
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