View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9351_low_11 (Length: 380)
Name: NF9351_low_11
Description: NF9351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9351_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 161; Significance: 9e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 159 - 364
Target Start/End: Complemental strand, 37942039 - 37941846
Alignment:
| Q |
159 |
gcttcttttcagcttgcaacaaattttcacaccatgaatgatcaaacacgcaacaacacgaataacaacatcaacatgcaggttggaaatcaaaacccaa |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37942039 |
gcttcttttcagcttgcaacaaattttcacaccatgaatgatcaaacacgcaacaaca------------tcaacatgcaggttggaaatcaaaacccaa |
37941952 |
T |
|
| Q |
259 |
agaaacgttcaagagcatcaaggcgtgcacctacagctgttctaacaacagacactacaaatttcagagccatggttcaaaaattcactggtatcccaga |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37941951 |
agaaacgttcaagagcatcaaggcgtgcacctacaactgttctaacaacagacactacaaatttcagagccatggttcaaaaattcactggtatcccaga |
37941852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 37942172 - 37942054
Alignment:
| Q |
11 |
cacagaccttgatactatctggtccaaaccagttagatccgaaccaaacaaagccgatcttaacaacttgttacctatttcttcatcgtcttcactacta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37942172 |
cacagaccttgatactatctggtccaaaccagttagatccgaaccaaacaaaaccgatcttaacaacttgttacctatttcttcatcgtcttcactacta |
37942073 |
T |
|
| Q |
111 |
cagaaccaaatcatgaatc |
129 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
37942072 |
cagaaccaaatcatgaatc |
37942054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 258 - 357
Target Start/End: Complemental strand, 39637085 - 39636986
Alignment:
| Q |
258 |
aagaaacgttcaagagcatcaaggcgtgcacctacagctgttctaacaacagacactacaaatttcagagccatggttcaaaaattcactggtatcccag |
357 |
Q |
| |
|
|||||| | |||||||| ||||| ||||||||||| | ||||| || ||||| |||||||||||||||||||||||||| |||| |||||||| |||| |
|
|
| T |
39637085 |
aagaaaagatcaagagcttcaagacgtgcacctactacagttctcactacagatactacaaatttcagagccatggttcaggaatttactggtataccag |
39636986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 355
Target Start/End: Complemental strand, 26257812 - 26257727
Alignment:
| Q |
270 |
agagcatcaaggcgtgcacctacagctgttctaacaacagacactacaaatttcagagccatggttcaaaaattcactggtatccc |
355 |
Q |
| |
|
||||||||||| | |||||||| | ||||||||||| |||||| | ||||| ||||||||||||||| ||||||| |||||||| |
|
|
| T |
26257812 |
agagcatcaagaagagcacctacgacagttctaacaaccgacacttcgaattttagagccatggttcaagaattcaccggtatccc |
26257727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University