View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9351_low_12 (Length: 359)
Name: NF9351_low_12
Description: NF9351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9351_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 10968654 - 10968304
Alignment:
| Q |
1 |
aaatcaccttgttcagcctttgttctgcatataatggccacgccaccataggcactccttcacaaatagcttccaacaccgagttccatccacaatgtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10968654 |
aaatcaccttgttcagcctttgttctgcatataatggccacgccaccataggcactccttcacaaatagcttccaacaccgagttccatccacaatgtgt |
10968555 |
T |
|
| Q |
101 |
cacgaatccaccaatcgagtcatgctttaatatcgcaccttgtggtgcccaatttcttacgaccattcccttttgctttgtcctctccaaaaacccttct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
10968554 |
cacgaatccaccaatcgagtcatgctttaatattgcaccttgtggtgcccaatttcttgccaccattcccttttgctttgtcctctccaaaaacccttca |
10968455 |
T |
|
| Q |
201 |
gggagcaactcgtccaaactttgctcctctaagtccaactcactcctaacaacccacaagaatctttgctcacttatttccaatccaagtgctatctcat |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10968454 |
ggaagcaactcgtccaaactttgctcctctaagtccaactcactcctaacaacccacaagaatctttgctcacttatttccaatccaagtgctatctcat |
10968355 |
T |
|
| Q |
301 |
tcaactgagccttagaaaatcttcccatgcttccaaaacttaacaacacga |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10968354 |
tcaactgagccttagaaaatcttcccatgcttccaaaacttaacaacacga |
10968304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 10982604 - 10982254
Alignment:
| Q |
1 |
aaatcaccttgttcagcctttgttctgcatataatggccacgccaccataggcactccttcacaaatagcttccaacaccgagttccatccacaatgtgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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|
| T |
10982604 |
aaatcaccttgttcagcctttgttctgcatacaatggccatgccaccataggcactccttcacatacagcttccaacaccgagttccatccacaatgtgt |
10982505 |
T |
|
| Q |
101 |
cacgaatccaccaatcgagtcatgctttaatatcgcaccttgtggtgcccaatttcttacgaccattcccttttgctttgtcctctccaaaaacccttct |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||| |
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|
| T |
10982504 |
cacgaatccaccgatcgagtcatgctttaatattgcaccttgtggtgcccaatttcttaccaccattcccctttcttttgtcctctccaaaaacccttca |
10982405 |
T |
|
| Q |
201 |
gggagcaactcgtccaaactttgctcctctaagtccaactcactcctaacaacccacaagaatctttgctcacttatttccaatccaagtgctatctcat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10982404 |
gggagcaactcgtccaaactttgctcctctaaatccaactcgctcctaataacccacaagaatctttgctcacttttttccaatccaagtgctatctcat |
10982305 |
T |
|
| Q |
301 |
tcaactgagccttagaaaatcttcccatgcttccaaaacttaacaacacga |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10982304 |
tcaactgagccttagaaaatcttcccatgcttccaaaacttaacaacacga |
10982254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 9 - 351
Target Start/End: Complemental strand, 11002826 - 11002484
Alignment:
| Q |
9 |
ttgttcagcctttgttctgcatataatggccacgccaccataggcactccttcacaaatagcttccaacaccgagttccatccacaatgtgtcacgaatc |
108 |
Q |
| |
|
||||||| ||||||||||||||| || ||||| || | ||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||| |
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|
| T |
11002826 |
ttgttcaacctttgttctgcatacaaaggccatgcaatcataggcactccttcacaaatagcttccaacactgagttccatccacagtgagtcacgaatc |
11002727 |
T |
|
| Q |
109 |
caccaatcgagtcatgctttaatatcgcaccttgtggtgcccaatttcttacgaccattcccttttgctttgtcctctccaaaaacccttctgggagcaa |
208 |
Q |
| |
|
|||||| || || || | ||||| ||| ||||||||||||||||||| || ||||||||||||| ||| ||||||||||||||||||||||| | ||| |
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|
| T |
11002726 |
caccaactgattcgtgactcaatattgcatcttgtggtgcccaatttctcaccaccattcccttttccttcgtcctctccaaaaacccttctggcaacaa |
11002627 |
T |
|
| Q |
209 |
ctcgtccaaactttgctcctctaagtccaactcactcctaacaacccacaagaatctttgctcacttatttccaatccaagtgctatctcattcaactga |
308 |
Q |
| |
|
|| |||||||| | ||||| |||| |||| ||||| |||| ||| |||||||||||||||||| | |||||||||| |||||||||||||||||| |
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|
| T |
11002626 |
gtcatccaaactaagttcctccaagtttgactcgctccttacaatccataagaatctttgctcacttttctccaatccaatagctatctcattcaactga |
11002527 |
T |
|
| Q |
309 |
gccttagaaaatcttcccatgcttccaaaacttaacaacacga |
351 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || ||||||| |
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|
| T |
11002526 |
gccttagaaaatctccccatgcttccaaaactcaaaaacacga |
11002484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 11019201 - 11018865
Alignment:
| Q |
15 |
agcctttgttctgcatataatggccacgccaccataggcactccttcacaaatagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaa |
114 |
Q |
| |
|
|||||||||||||| | || ||||| || | ||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| | |
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|
| T |
11019201 |
agcctttgttctgcgaacaaaggccatgcaatcattggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaaatccaccca |
11019102 |
T |
|
| Q |
115 |
tcgagtcatgctttaatatcgcaccttgtggtgcccaatttcttacgaccattcccttttgctttgtcctctccaaaaacccttctgggagcaactcgtc |
214 |
Q |
| |
|
|||| ||| | ||||||||| ||||||| ||||||||||| || ||||||||||| | ||||||||||||||||||||||||||| | |||||||| |
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|
| T |
11019101 |
cggagttatgactcaatatcgcaacttgtggggcccaatttctcacaaccattcccttgtcctttgtcctctccaaaaacccttctggaaataactcgtc |
11019002 |
T |
|
| Q |
215 |
caaactttgctcctctaagtccaactcactcctaacaacccacaagaatctttgctcacttatttccaatccaagtgctatctcattcaactgagcctta |
314 |
Q |
| |
|
|||||| || ||| |||| |||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||| |||||| || |
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|
| T |
11019001 |
caaactcaacttgtctgagtctggttcactcctaacaacccacaagaatctttgctcacttttctccaatccaatagctatctcattcaattgagcccta |
11018902 |
T |
|
| Q |
315 |
gaaaatcttcccatgcttccaaaacttaacaacacga |
351 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| |
|
|
| T |
11018901 |
gaaaatcttcccatgcttccaaagctcaacaacacga |
11018865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 54 - 351
Target Start/End: Complemental strand, 11079922 - 11079625
Alignment:
| Q |
54 |
actccttcacaaatagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaatcgagtcatgctttaatatcgcaccttgtggtgcccaat |
153 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||| ||| ||| ||| ||| | ||||||||||||||| | |
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|
| T |
11079922 |
actccttcgcaaatagcttccaacacggagttccatccacaatgagtcacgaacccaccaactgagctatgtcttagtattgaaccttgtggtgcccagt |
11079823 |
T |
|
| Q |
154 |
ttcttacgaccattcccttttgctttgtcctctccaaaaacccttctgggagcaactcgtccaaactttgctcctctaagtccaactcactcctaacaac |
253 |
Q |
| |
|
|||| || ||||||||||| | ||||||||||||||||||||||||||| | |||||| ||||||||| | ||||| | |||| || |||||||||| |
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|
| T |
11079822 |
ttctaacaaccattcccttctcctttgtcctctccaaaaacccttctggcaacaactcatccaaacttagttcctccgactccatatcgctcctaacaat |
11079723 |
T |
|
| Q |
254 |
ccacaagaatctttgctcacttatttccaatccaagtgctatctcattcaactgagccttagaaaatcttcccatgcttccaaaacttaacaacacga |
351 |
Q |
| |
|
||||||||||||||| |||||| ||||||| |||| ||||||| ||| | ||||||||||||||||| || | ||||||||| || ||||| |||| |
|
|
| T |
11079722 |
ccacaagaatctttgttcacttttttccaaaccaatagctatctgattaatttgagccttagaaaatctccctaagcttccaaagctcaacaaaacga |
11079625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 11050317 - 11050235
Alignment:
| Q |
15 |
agcctttgttctgcatataatggccacgccaccataggcactccttcacaaatagcttccaacaccgagttccatccacaatg |
97 |
Q |
| |
|
||||||||||||||| | || ||||| || | ||| ||||| |||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
11050317 |
agcctttgttctgcaaacaaaggccatgcaatcattggcaccccttcataaatagcttccaacacggagttccatccacaatg |
11050235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 4493253 - 4493290
Alignment:
| Q |
81 |
gagttccatccacaatgtgtcacgaatccaccaatcga |
118 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
4493253 |
gagttccatccacaatgagtcaagaatccaccaatcga |
4493290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 23628117 - 23628149
Alignment:
| Q |
70 |
cttccaacaccgagttccatccacaatgtgtca |
102 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
23628117 |
cttccaacaccgagttccatccacaatgagtca |
23628149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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