View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9351_low_13 (Length: 317)
Name: NF9351_low_13
Description: NF9351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9351_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 2829448 - 2829155
Alignment:
| Q |
1 |
ccatttgtggaagcagtaaagatgcggttgcaaggtctcccaaatgatactataattacaagggtgcaacctagcagacaaaattgtttagcaggagaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2829448 |
ccatttgtggaagcagtaaagatgcggttgcaaggtctcccaaatgatactataattacaagggtgcaacctagcagacaaaattgtttagcaggagaga |
2829349 |
T |
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| Q |
101 |
gtcacattgttttgaaaaatggtaaagttgtccaaaacttggttcttagattaagaaatgttgaatgtggggaagtggagattcaattgcattggattga |
200 |
Q |
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| T |
2829348 |
gtcacattgttttgaaaaatggtaaagttgtccaaaagttggttcttagattaagaaatgttgaatgtggggaagtggagattcaattgcattggattga |
2829249 |
T |
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| Q |
201 |
cattcctggttcaaaggctctttaggttacaaaatatttcttcttggcatttatgttgtcattagcacgctatagcggtgctatggtggaatgg |
294 |
Q |
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| T |
2829248 |
cattcctggttcaaaggctctttaggttacaaaatatttcttcttggcatttatgttgtcattagcgcgctatagcggtgctatggtggaatgg |
2829155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 30182783 - 30182548
Alignment:
| Q |
1 |
ccatttgtggaagcagtaaagatgcggttgcaaggtctcccaaatgatactataattacaagggtgcaacctagcagacaaaattgtttagcaggagaga |
100 |
Q |
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|||||| | |||||||| |||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
30182783 |
ccattttttgaagcagtgaagatgcggttggcaggtctcccaaatgaggctatagttacaagggtgcaacctagcagacaaaattgcttagcagaagaga |
30182684 |
T |
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| Q |
101 |
gtcacattgttttgaaaaatggtaaagttgtccaaaacttggttcttagattaagaaatgttgaatgtggggaagtggagattcaattgcattggattga |
200 |
Q |
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| T |
30182683 |
gtcacattgtttggaaagatggtaaaattttccaaaacatggttcttagactaagaaatgtcgaatgtggggaagtggaactccagttgcactgggttga |
30182584 |
T |
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| Q |
201 |
cattcctggttcaaaggctctttaggttacaaaata |
236 |
Q |
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| T |
30182583 |
cattcctggttcaaaggttatgtaggttaccaaata |
30182548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 30055284 - 30055138
Alignment:
| Q |
1 |
ccatttgtggaagcagtaaagatgcggttgcaaggtctcccaaatgatactataattacaagggtgcaacctagcagacaaaattgtttagcaggagaga |
100 |
Q |
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|||||| | ||||||||||||||||||||| |||||||||||| || |||| |||| |||||||||||||| |||||||| || ||||||| ||||| |
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| T |
30055284 |
ccattttttgaagcagtaaagatgcggttgacaggtctcccaaacgaggttatagttacgagggtgcaacctagtagacaaaactgcttagcagaagaga |
30055185 |
T |
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| Q |
101 |
gtcacattgttttgaaaaatggtaaagttgtccaaaacttggttctt |
147 |
Q |
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| T |
30055184 |
gttacattgtttagaaagatggtaaaattttccaaaacatgattctt |
30055138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 30181292 - 30181204
Alignment:
| Q |
15 |
agtaaagatgcggttgcaaggtctcccaaatgatactataattacaagggtgcaacctagcagacaaaattgtttagcaggagagagtc |
103 |
Q |
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| T |
30181292 |
agtaaagatgcggttggaaggtctcccaaacgatactatggttacaagggtccaacctagcagacaaaactgcttagcagaagagagtc |
30181204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 30129148 - 30129079
Alignment:
| Q |
111 |
tttgaaaa-atggtaaagttgtccaaaacttggttcttagattaagaaatgttgaatgtggggaagtgga |
179 |
Q |
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|||||||| |||||||| || |||||||| ||||||||||| |||||||||||||||||| ||||||||| |
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| T |
30129148 |
tttgaaaagatggtaaaattttccaaaacatggttcttagactaagaaatgttgaatgtgaggaagtgga |
30129079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 45348535 - 45348613
Alignment:
| Q |
119 |
atggtaaagttgtccaaaacttggttcttagattaagaaatgttgaatgtggggaagtggagattcaattgcattggat |
197 |
Q |
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|||| |||||||||||| | | || |||||||| ||||||||||||||||| |||||||| ||||||||||| ||||| |
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| T |
45348535 |
atggcaaagttgtccaagatgttgtccttagattgagaaatgttgaatgtggtgaagtggaaattcaattgcaatggat |
45348613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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