View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9351_low_15 (Length: 317)

Name: NF9351_low_15
Description: NF9351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9351_low_15
NF9351_low_15
[»] chr4 (6 HSPs)
chr4 (7-304)||(9156317-9156614)
chr4 (155-258)||(9194744-9194849)
chr4 (136-243)||(9232624-9232732)
chr4 (116-241)||(9257729-9257855)
chr4 (138-241)||(9168010-9168114)
chr4 (140-174)||(9308700-9308734)
[»] scaffold0135 (1 HSPs)
scaffold0135 (136-243)||(38490-38598)


Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 7 - 304
Target Start/End: Complemental strand, 9156614 - 9156317
Alignment:
Q  7 gttttaatatttcagtaaccaattaaaattttatattgtgctgcatagaaaaatatatatgaactacttttaaaagaaacctgaatatctaataaatcaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9156614 gttttaatatttcagtaaccaattaaaattttatattgtgctgcatagaaaaatatatatgaactacttttaaaagaaacctgaatatctaataaatcaa 9156515  T
Q  107 attctgattcttgagctgatgatggtaggttaggaggaggagcatcataaacaactctcaatttgcacatttcaaccttatatccggaatcttgaaaaaa 206  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9156514 attctgatgcttgagctggtgatggtaggttaggaggaggagcatcataaacaactctcaatttgcacatttcaaccttatatccggaatcttgaaaaaa 9156415  T
Q  207 ctacatgcaattaaaaagaaaacgattaaaatatgcagcgtgagtgcaaaacaatttgttgtttgtgcttagttaccatttctgaagtgatatcttct 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9156414 ctacatgcaattaaaaagaaaacgattaaaatatgcagcgtgagtgcaaaacaatttgttgtttgtgcttagttaccatttctgaagtgatatcttct 9156317  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 155 - 258
Target Start/End: Complemental strand, 9194849 - 9194744
Alignment:
Q  155 aaacaactctcaatttgcacatttcaaccttatatccggaatcttgaaaaaactacatgcaatt--aaaaagaaaacgattaaaatatgcagcgtgagtg 252  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| || |||| |||||||||  ||||  ||||||||||||||||||||| | ||||    
T  9194849 aaacaactctcaatttgcacacttcaaccttatatccggaatcttgtaagaactgcatgcaattagaaaataaaaacgattaaaatatgcagcataagtg 9194750  T
Q  253 caaaac 258  Q
     |||||    
T  9194749 aaaaac 9194744  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 243
Target Start/End: Complemental strand, 9232732 - 9232624
Alignment:
Q  136 ttaggaggaggagcatcataaacaactctcaatttgcacatttcaaccttatatccggaatcttgaaaaaactacatgcaatta-aaaagaaaacgatta 234  Q
    ||||||||||||||| || ||||| |||| |||||| ||  || ||| | |||||||||||||| |  ||||| |||||||| | |||||||||||||||    
T  9232732 ttaggaggaggagcaacacaaacagctctaaatttggactctttaacttcatatccggaatctttattaaacttcatgcaatgagaaaagaaaacgatta 9232633  T
Q  235 aaatatgca 243  Q
    |||||||||    
T  9232632 aaatatgca 9232624  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 9257855 - 9257729
Alignment:
Q  116 cttgagctgatgatggtaggttaggaggaggagcatcataaacaactctcaatttgcacatttcaaccttatatccggaatcttgaaaaaactacatgca 215  Q
    ||||| ||| ||||||  |||||| |||||||||| || ||||| |||| |||||| ||  || ||| | |||||||||||||| | |||||| ||||||    
T  9257855 cttgaactggtgatggagggttagaaggaggagcaacacaaacagctctaaatttggactctttaacttcatatccggaatctttataaaacttcatgca 9257756  T
Q  216 at-taaaaagaaaacgattaaaatatg 241  Q
    ||  ||||||||||| |||||||||||    
T  9257755 atgaaaaaagaaaacaattaaaatatg 9257729  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 241
Target Start/End: Original strand, 9168010 - 9168114
Alignment:
Q  138 aggaggaggagcatcataaacaactctcaatttgcacatttcaaccttatatccggaatcttgaaaaaactacatgcaat-taaaaagaaaacgattaaa 236  Q
    ||||||||||||| || ||||| |||| |||||| ||  || ||| | |||||||||||||| | |||||| ||||||||  ||||||||||| ||||||    
T  9168010 aggaggaggagcaacacaaacagctctaaatttggactctttaacttcatatccggaatctttataaaacttcatgcaatgaaaaaagaaaacaattaaa 9168109  T
Q  237 atatg 241  Q
    |||||    
T  9168110 atatg 9168114  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 174
Target Start/End: Original strand, 9308700 - 9308734
Alignment:
Q  140 gaggaggagcatcataaacaactctcaatttgcac 174  Q
    ||||||||||| |||||||||||||||||||||||    
T  9308700 gaggaggagcaacataaacaactctcaatttgcac 9308734  T

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Target: scaffold0135 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 243
Target Start/End: Complemental strand, 38598 - 38490
Alignment:
Q  136 ttaggaggaggagcatcataaacaactctcaatttgcacatttcaaccttatatccggaatcttgaaaaaactacatgcaatta-aaaagaaaacgatta 234  Q
    ||||||||||||||| || ||||| |||| |||||| ||  || ||| | |||||||||||||| |  ||||| |||||||| | |||||||||||||||    
T  38598 ttaggaggaggagcaacacaaacagctctaaatttggactctttaacttcatatccggaatctttattaaacttcatgcaatgagaaaagaaaacgatta 38499  T
Q  235 aaatatgca 243  Q
    |||||||||    
T  38498 aaatatgca 38490  T

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