View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9351_low_2 (Length: 540)
Name: NF9351_low_2
Description: NF9351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9351_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 16 - 531
Target Start/End: Original strand, 53615011 - 53615526
Alignment:
| Q |
16 |
gttgtagcacttggtgctcccttggactccccaacacgttccctcactcgatcgtacctcaggagccacgtaacacggggatccacactttgtgtttagg |
115 |
Q |
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| T |
53615011 |
gttgttgcacttggtgctcccttggactccccaacacgttccctcactcgatcatacctcaggagccacgtaacacggggatccacactttgtgtttagg |
53615110 |
T |
|
| Q |
116 |
acatcattaggctgcaaatgtatcaaaatttaatcgttaccaatcaaaaagtcttacaattgaactcgtgattagtttgaaacaaatttttaaccttatt |
215 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| |
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| T |
53615111 |
acattattaggctgcaaatttatcaaaatttaatcgttaccaatcaaaaagtcttacaattgaacttgtgattaggttgaaacaaattttttaccttatt |
53615210 |
T |
|
| Q |
216 |
cagtgcacttaatccaaaatcagacacttttagatttcccttgctgtcttggagcaagttttctggctgtattgacacatgtaaaaggtgtaaggtttca |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53615211 |
cagtgcacttaatccaaaatcagacacttttagatttcccttgctgtctaggagcaagttttctggctgtattgacacatgtaaaaggtgtaaggtttca |
53615310 |
T |
|
| Q |
316 |
aaacttgtttttctaaacaaagaaaaatgcaggattggtttaacttaccttgagatcgcggtgataaactcccttgttatggcagtagtcgacggcgtca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53615311 |
aaacttgtttttctaaacaaagaaaaatgcaggattggtttaacttaccttgagatcgcggtgataaactcccttgttatggcagtagtcgacggcgtca |
53615410 |
T |
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| Q |
416 |
ataagttgttggaatagttttcttgcctcacattcattcaacttgttgcaataggactgcataaacaaaattttcagaattgaagtattataattgtaag |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53615411 |
ataagttgttggaatagttttcttgcctcacattcattcaacttgttgcaataggactgcataaacaaaattttcagaattgaagtattataattgtaag |
53615510 |
T |
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| Q |
516 |
tacgcaacatttgaac |
531 |
Q |
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| T |
53615511 |
tacacaacatttgaac |
53615526 |
T |
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