View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9351_low_3 (Length: 466)

Name: NF9351_low_3
Description: NF9351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9351_low_3
NF9351_low_3
[»] chr2 (2 HSPs)
chr2 (14-448)||(42691925-42692359)
chr2 (33-419)||(42689508-42689894)
[»] chr8 (19 HSPs)
chr8 (36-265)||(6262182-6262411)
chr8 (28-216)||(6273440-6273628)
chr8 (29-260)||(6362070-6362301)
chr8 (154-409)||(6455952-6456207)
chr8 (303-391)||(6261964-6262052)
chr8 (29-265)||(6351180-6351416)
chr8 (156-408)||(6449486-6449738)
chr8 (154-265)||(6389822-6389933)
chr8 (156-271)||(6423091-6423206)
chr8 (154-265)||(7457921-7458032)
chr8 (154-265)||(7470323-7470434)
chr8 (154-199)||(6368906-6368951)
chr8 (29-85)||(6287822-6287878)
chr8 (154-265)||(6409071-6409182)
chr8 (30-196)||(6320339-6320505)
chr8 (30-196)||(6330801-6330967)
chr8 (154-216)||(6287691-6287753)
chr8 (31-85)||(7458101-7458155)
chr8 (31-85)||(7470503-7470557)
[»] chr5 (1 HSPs)
chr5 (154-409)||(9606276-9606531)
[»] chr1 (1 HSPs)
chr1 (75-203)||(36926276-36926404)
[»] chr7 (1 HSPs)
chr7 (75-119)||(46709271-46709315)


Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 14 - 448
Target Start/End: Complemental strand, 42692359 - 42691925
Alignment:
Q  14 agatgacatacttagacaagattctgaactccaagcttggtggaaagaactcgtagaggttggtcacggtgataagaaaaacgagccatggtggcctaag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42692359 agatgacatacttagacaagattctgaactccaagcttggtggaaagaactcgtagaggttggtcacggtgataagaaaaacgagccatggtggcctaag 42692260  T
Q  114 atgcaagctcgtgaagagctagtcgaagtttgcactactgtcatatggattgcttcagctcttcacgcagctgttaattttggacagtattcctacggag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42692259 atgcaagctcgtgaagagctagtcgaagtttgcactactgtcatatggattgcttcagctcttcatgcagctgttaattttggacagtattcctacggag 42692160  T
Q  214 gtttaatattaaaccgtccaactctcagtaggagattcatgcctgagaaagggtcagcggaatacaacgagttagtcaaaagtccacaaaaggcatactt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42692159 gtttaatattaaaccgtccaactctcagtaggagattcatgcctgagaaagggtcagcggaatacaacgagctagtcaaaagtccacaaaaggcatactt 42692060  T
Q  314 gaagacaattacaccgaagtttcagacgcttatcgacctttccgttatagaaatattgtcaaggcacgcttctgatgaagtgtaccttggagagagagac 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42692059 gaagacaattacaccgaagtttcagacgcttatcgacctttccgttatagaaatattgtcaaggcacgcttctgatgaagtgtaccttggagagagagac 42691960  T
Q  414 aatccaaactggacatcagatacaagggcattaga 448  Q
    |||||||||||||||||||||||||||||||||||    
T  42691959 aatccaaactggacatcagatacaagggcattaga 42691925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 33 - 419
Target Start/End: Original strand, 42689508 - 42689894
Alignment:
Q  33 gattctgaactccaagcttggtggaaagaactcgtagaggttggtcacggtgataagaaaaacgagccatggtggcctaagatgcaagctcgtgaagagc 132  Q
    |||||||| || |||  ||||||||||||| | ||||||   ||||| ||||||  |||| || ||||||||||||| ||| ||||| | | ||||||||    
T  42689508 gattctgagcttcaacattggtggaaagaagttgtagagaaaggtcatggtgatttgaaagacaagccatggtggcccaagttgcaaacacttgaagagc 42689607  T
Q  133 tagtcgaagtttgcactactgtcatatggattgcttcagctcttcacgcagctgttaattttggacagtattcctacggaggtttaatattaaaccgtcc 232  Q
    | || |||| ||||||||   |||||||||  |||||||| || ||||||||||||||||||||||| ||| | ||||| ||||| ||  ||||||| ||    
T  42689608 ttgttgaagcttgcactatcatcatatggacggcttcagccctccacgcagctgttaattttggacaatatccttacggcggttttattctaaaccgccc 42689707  T
Q  233 aactctcagtaggagattcatgcctgagaaagggtcagcggaatacaacgagttagtcaaaagtccacaaaaggcatacttgaagacaattacaccgaag 332  Q
    |||| ||||||| |||||  | |||||| ||||  | ||  ||||  | ||  | || || ||||| |||||||| |||||||  ||||| || ||||||    
T  42689708 aactatcagtagaagattacttcctgaggaaggaactgcacaatatgatgaaatggtgaagagtcctcaaaaggcttacttgagaacaatcacgccgaag 42689807  T
Q  333 tttcagacgcttatcgacctttccgttatagaaatattgtcaaggcacgcttctgatgaagtgtaccttggagagagagacaatcca 419  Q
    |||||||| ||||| |||||||| || ||||||||||||||||| || |||||||||||||| ||||||||| | ||||| ||||||    
T  42689808 tttcagactcttattgacctttcagtgatagaaatattgtcaagacatgcttctgatgaagtttaccttggacaaagagaaaatcca 42689894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 36 - 265
Target Start/End: Complemental strand, 6262411 - 6262182
Alignment:
Q  36 tctgaactccaagcttggtggaaagaactcgtagaggttggtcacggtgataagaaaaacgagccatggtggcctaagatgcaagctcgtgaagagctag 135  Q
    |||||||||||| |||||||||||||| | ||||| || ||||| ||||| |||||| |||||||||||||||| || |||||| |||| |||||| |      
T  6262411 tctgaactccaatcttggtggaaagaagttgtagaagtgggtcatggtgacaagaaagacgagccatggtggccgaaaatgcaaactcgcgaagagttga 6262312  T
Q  136 tcgaagtttgcactactgtcatatggattgcttcagctcttcacgcagctgttaattttggacagtattcctacggaggtttaatattaaaccgtccaac 235  Q
    |  ||||||||| || | ||||||||| ||||||||||||||| |||||||||||||||||||| ||| | || |||||||| |||||||||||||||||    
T  6262311 ttcaagtttgcagtattatcatatggactgcttcagctcttcatgcagctgttaattttggacaatatccgtatggaggtttcatattaaaccgtccaac 6262212  T
Q  236 tctcagtaggagattcatgcctgagaaagg 265  Q
    ||| |||||| |||| ||||||||||||||    
T  6262211 tcttagtaggcgattaatgcctgagaaagg 6262182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 216
Target Start/End: Complemental strand, 6273628 - 6273440
Alignment:
Q  28 gacaagattctgaactccaagcttggtggaaagaactcgtagaggttggtcacggtgataagaaaaacgagccatggtggcctaagatgcaagctcgtga 127  Q
    |||||||||||||||||||||| |  ||||||||||| ||||||||||||||||||||   |||||| |    |||||||  |||||||||| ||||       
T  6273628 gacaagattctgaactccaagcattttggaaagaacttgtagaggttggtcacggtgacttgaaaaatgctaaatggtgggttaagatgcaaactcgcac 6273529  T
Q  128 agagctagtcgaagtttgcactactgtcatatggattgcttcagctcttcacgcagctgttaattttggacagtattcctacggaggtt 216  Q
    |||| |  | ||   |||||||||  ||||||||||||||||||| ||||| |||||||||||||||||||| ||| | ||||| ||||    
T  6273528 agagttgattgactcttgcactaccctcatatggattgcttcagcacttcatgcagctgttaattttggacaatatccgtacggtggtt 6273440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 29 - 260
Target Start/End: Complemental strand, 6362301 - 6362070
Alignment:
Q  29 acaagattctgaactccaagcttggtggaaagaactcgtagaggttggtcacggtgataagaaaaacgagccatggtggcctaagatgcaagctcgtgaa 128  Q
    ||||||||||||||||||||| |  ||||||||||| |||||||| ||||| |||||   ||| || |   ||||||||  |||||||||| |||||||     
T  6362301 acaagattctgaactccaagcattctggaaagaacttgtagaggtcggtcatggtgacttgaagaatgctacatggtggtttaagatgcaaactcgtgag 6362202  T
Q  129 gagctagtcgaagtttgcactactgtcatatggattgcttcagctcttcacgcagctgttaattttggacagtattcctacggaggtttaatattaaacc 228  Q
    ||| |  | |||| |||||| ||  ||||||||||||||||||| ||||| ||||| |||||||||||||| ||| | || ||||| |  ||  | ||||    
T  6362201 gagttgattgaagcttgcaccaccctcatatggattgcttcagcacttcatgcagcagttaattttggacaatatccgtatggaggatatatcgttaacc 6362102  T
Q  229 gtccaactctcagtaggagattcatgcctgag 260  Q
    | ||||||   ||||| |||||||||||||||    
T  6362101 gaccaactaaaagtagaagattcatgcctgag 6362070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 154 - 409
Target Start/End: Complemental strand, 6456207 - 6455952
Alignment:
Q  154 tcatatggattgcttcagctcttcacgcagctgttaattttggacagtattcctacggaggtttaatattaaaccgtccaactctcagtaggagattcat 253  Q
    ||||||||| ||||||||||||||| ||||| ||||| |||||||||||| | || ||||| |  ||  | |||||||||||||| ||||| ||||| ||    
T  6456207 tcatatggactgcttcagctcttcatgcagcagttaactttggacagtatccttatggaggatatatcctgaaccgtccaactcttagtagaagatttat 6456108  T
Q  254 gcctgagaaagggtcagcggaatacaacgagttagtcaaaagtccacaaaaggcatacttgaagacaattacaccgaagtttcagacgcttatcgacctt 353  Q
     || ||| ||||  |  |||| ||  | ||| | || |||||||| |||||||| || ||||  || |||||||| ||||||||||| || || || |||    
T  6456107 tccggagcaaggaactccggagtatgatgagatggtgaaaagtcctcaaaaggcgtatttgagaactattacaccaaagtttcagaccctcattgatctt 6456008  T
Q  354 tccgttatagaaatattgtcaaggcacgcttctgatgaagtgtaccttggagagag 409  Q
    || || || || ||||||||||| || ||||||||||| ||||| || ||||||||    
T  6456007 tctgtgattgagatattgtcaagacatgcttctgatgaggtgtatctcggagagag 6455952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 391
Target Start/End: Complemental strand, 6262052 - 6261964
Alignment:
Q  303 aaggcatacttgaagacaattacaccgaagtttcagacgcttatcgacctttccgttatagaaatattgtcaaggcacgcttctgatga 391  Q
    ||||| |||||||  |||||||||||||||||||| ||||| || || ||||| || |||||||||||||| ||||| |||||||||||    
T  6262052 aaggcctacttgagaacaattacaccgaagtttcaaacgctgattgatctttcagtcatagaaatattgtcgaggcatgcttctgatga 6261964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 265
Target Start/End: Complemental strand, 6351416 - 6351180
Alignment:
Q  29 acaagattctgaactccaagcttggtggaaagaactcgtagaggttggtcacggtgataagaaaaacgagccatggtggcctaagatgcaagctcgtgaa 128  Q
    ||||||| ||||||||||||| |  ||||| ||||| |||||||||||||| |||||   ||| || |   ||||||||  |||||||||| | ||||||    
T  6351416 acaagatgctgaactccaagcattctggaaggaacttgtagaggttggtcatggtgacctgaagaatgccacatggtggtttaagatgcaaacccgtgaa 6351317  T
Q  129 gagctagtcgaagtttgcactactgtcatatggattgcttcagctcttcacgcagctgttaattttggacagtattcctacggaggtttaatattaaacc 228  Q
    ||| |  |||||| || ||| |   | ||||||||||||||||| ||||| |||||||||||||| ||||| ||| | || ||||| |  ||  | ||||    
T  6351316 gagttgatcgaagcttccaccatccttatatggattgcttcagcacttcatgcagctgttaatttcggacaatatccatatggaggatatatccttaacc 6351217  T
Q  229 gtccaactctcagtaggagattcatgcctgagaaagg 265  Q
    | |||||    ||||| ||||||||||||||||||||    
T  6351216 ggccaacaaagagtagaagattcatgcctgagaaagg 6351180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 408
Target Start/End: Complemental strand, 6449738 - 6449486
Alignment:
Q  156 atatggattgcttcagctcttcacgcagctgttaattttggacagtattcctacggaggtttaatattaaaccgtccaactctcagtaggagattcatgc 255  Q
    ||||||| |||||| |||||||| |||||||||||||| ||||| ||| | |||||||| |  ||  | |||||||||||  | ||||| ||||| || |    
T  6449738 atatggactgcttctgctcttcatgcagctgttaatttcggacaatatccttacggaggatatatcctgaaccgtccaacaattagtagaagatttattc 6449639  T
Q  256 ctgagaaagggtcagcggaatacaacgagttagtcaaaagtccacaaaaggcatacttgaagacaattacaccgaagtttcagacgcttatcgacctttc 355  Q
    | |||  |||  |  |||||||| | ||| | || |||||||| |||||||| || ||||  || |||||||| |||| ||| || ||| | || |||||    
T  6449638 cggagccaggaactccggaatacgatgagatggtgaaaagtcctcaaaaggcgtatttgagaactattacaccaaagtatcaaacccttgttgatctttc 6449539  T
Q  356 cgttatagaaatattgtcaaggcacgcttctgatgaagtgtaccttggagaga 408  Q
     || || || ||||||||||| || || || ||||||||||| ||||||||||    
T  6449538 tgtgatcgagatattgtcaagacatgcgtccgatgaagtgtatcttggagaga 6449486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 265
Target Start/End: Complemental strand, 6389933 - 6389822
Alignment:
Q  154 tcatatggattgcttcagctcttcacgcagctgttaattttggacagtattcctacggaggtttaatattaaaccgtccaactctcagtaggagattcat 253  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||| ||| | ||||| || |  ||  | ||||| ||||||   || || ||||||||    
T  6389933 tcatatggattgcttcagcacttcatgcagctgttaattttggacaatatccgtacggtggatacattgttaaccgaccaactaaaagcagaagattcat 6389834  T
Q  254 gcctgagaaagg 265  Q
    ||||||||||||    
T  6389833 gcctgagaaagg 6389822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 271
Target Start/End: Complemental strand, 6423206 - 6423091
Alignment:
Q  156 atatggattgcttcagctcttcacgcagctgttaattttggacagtattcctacggaggtttaatattaaaccgtccaactctcagtaggagattcatgc 255  Q
    ||||||||||||||||| ||||| |||||||||||||||||||| ||  | || ||||| |  ||  | ||||| ||||||   || |||||||||||||    
T  6423206 atatggattgcttcagcacttcatgcagctgttaattttggacaatacccatatggaggatacatccttaaccgaccaactaagagcaggagattcatgc 6423107  T
Q  256 ctgagaaagggtcagc 271  Q
    |||||||||| |||||    
T  6423106 ctgagaaaggatcagc 6423091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 265
Target Start/End: Complemental strand, 7458032 - 7457921
Alignment:
Q  154 tcatatggattgcttcagctcttcacgcagctgttaattttggacagtattcctacggaggtttaatattaaaccgtccaactctcagtaggagattcat 253  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||| ||| | || ||||| |  ||  | ||||| |||||    ||||| ||||||||    
T  7458032 tcatatggattgcttcagcacttcatgcagctgttaattttggacaatatgcgtatggaggatatatccttaaccgaccaacaaaaagtagaagattcat 7457933  T
Q  254 gcctgagaaagg 265  Q
    ||||||||||||    
T  7457932 gcctgagaaagg 7457921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 265
Target Start/End: Complemental strand, 7470434 - 7470323
Alignment:
Q  154 tcatatggattgcttcagctcttcacgcagctgttaattttggacagtattcctacggaggtttaatattaaaccgtccaactctcagtaggagattcat 253  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||| ||| | || ||||| |  ||  | ||||| |||||    ||||| ||||||||    
T  7470434 tcatatggattgcttcagcacttcatgcagctgttaattttggacaatatgcgtatggaggatatatccttaaccgaccaacaaaaagtagaagattcat 7470335  T
Q  254 gcctgagaaagg 265  Q
    ||||||||||||    
T  7470334 gcctgagaaagg 7470323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 6368951 - 6368906
Alignment:
Q  154 tcatatggattgcttcagctcttcacgcagctgttaattttggaca 199  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||    
T  6368951 tcatatggattgcttcagcacttcatgcagctgttaattttggaca 6368906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 6287878 - 6287822
Alignment:
Q  29 acaagattctgaactccaagcttggtggaaagaactcgtagaggttggtcacggtga 85  Q
    ||||||||||||||||||||| |  ||||||||||| |||||||| |||||||||||    
T  6287878 acaagattctgaactccaagcattctggaaagaacttgtagaggtaggtcacggtga 6287822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 265
Target Start/End: Complemental strand, 6409182 - 6409071
Alignment:
Q  154 tcatatggattgcttcagctcttcacgcagctgttaattttggacagtattcctacggaggtttaatattaaaccgtccaactctcagtaggagattcat 253  Q
    |||| ||||| |||||||| ||||| |||||||||||||||||||| ||| | ||||| || |  ||  | ||||| ||||||   ||||| ||||||||    
T  6409182 tcatttggatggcttcagcacttcatgcagctgttaattttggacaatatccttacggtggatacattgttaaccgaccaactaaaagtagaagattcat 6409083  T
Q  254 gcctgagaaagg 265  Q
    ||||||||||||    
T  6409082 gcctgagaaagg 6409071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 196
Target Start/End: Complemental strand, 6320505 - 6320339
Alignment:
Q  30 caagattctgaactccaagcttggtggaaagaactcgtagaggttggtcacggtgataagaaaaacgagccatggtggcctaagatgcaagctcgtgaag 129  Q
    |||||||||||||| ||||| |  |||| |||| | |||||||| ||||| ||||||  ||| || |   ||||||||  |||||||||| || ||  ||    
T  6320505 caagattctgaactgcaagcattttggagagaagttgtagaggtgggtcatggtgatttgaagaatgctacatggtggtttaagatgcaaacttgtacag 6320406  T
Q  130 agctagtcgaagtttgcactactgtcatatggattgcttcagctcttcacgcagctgttaattttgg 196  Q
    || |  | |||| ||||||||   ||||||||||||||||||| | ||| |||||||||||||||||    
T  6320405 agttgattgaagcttgcactatcctcatatggattgcttcagcacatcatgcagctgttaattttgg 6320339  T

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Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 196
Target Start/End: Complemental strand, 6330967 - 6330801
Alignment:
Q  30 caagattctgaactccaagcttggtggaaagaactcgtagaggttggtcacggtgataagaaaaacgagccatggtggcctaagatgcaagctcgtgaag 129  Q
    |||||||||||||| ||||| |  |||| |||| | |||||||| ||||| ||||||  ||| || |   ||||||||  |||||||||| || ||  ||    
T  6330967 caagattctgaactgcaagcattttggagagaagttgtagaggtgggtcatggtgatttgaagaatgctacatggtggtttaagatgcaaacttgtacag 6330868  T
Q  130 agctagtcgaagtttgcactactgtcatatggattgcttcagctcttcacgcagctgttaattttgg 196  Q
    || |  | |||| ||||||||   ||||||||||||||||||| | ||| |||||||||||||||||    
T  6330867 agttgattgaagcttgcactatcctcatatggattgcttcagcacatcatgcagctgttaattttgg 6330801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 6287753 - 6287691
Alignment:
Q  154 tcatatggattgcttcagctcttcacgcagctgttaattttggacagtattcctacggaggtt 216  Q
    |||||||||||||||| || ||||| || ||||||||||||||||| ||| | ||||| ||||    
T  6287753 tcatatggattgcttcggcacttcatgcggctgttaattttggacaatatccgtacggtggtt 6287691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 7458155 - 7458101
Alignment:
Q  31 aagattctgaactccaagcttggtggaaagaactcgtagaggttggtcacggtga 85  Q
    ||||||||||||||||||| |  ||||||||||| |||||||| ||||| |||||    
T  7458155 aagattctgaactccaagcattttggaaagaacttgtagaggtgggtcatggtga 7458101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 7470557 - 7470503
Alignment:
Q  31 aagattctgaactccaagcttggtggaaagaactcgtagaggttggtcacggtga 85  Q
    ||||||||||||||||||| |  ||||||||||| |||||||| ||||| |||||    
T  7470557 aagattctgaactccaagcattttggaaagaacttgtagaggtgggtcatggtga 7470503  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 409
Target Start/End: Original strand, 9606276 - 9606531
Alignment:
Q  154 tcatatggattgcttcagctcttcacgcagctgttaattttggacagtattcctacggaggtttaatattaaaccgtccaactctcagtaggagattcat 253  Q
    ||||||||| |||||| |||||||| |||||||||||||||||||| ||| | || |||||||  ||  ||||||||||||| || ||| | ||||  ||    
T  9606276 tcatatggactgcttctgctcttcatgcagctgttaattttggacaatatccttatggaggttatattctaaaccgtccaacacttagtcgaagatggat 9606375  T
Q  254 gcctgagaaagggtcagcggaatacaacgagttagtcaaaagtccacaaaaggcatacttgaagacaattacaccgaagtttcagacgcttatcgacctt 353  Q
     || ||||||||  |  || | ||  | ||| | || ||||  || ||||||||||| ||||  ||||||||||| || | ||| || || || || |||    
T  9606376 cccggagaaaggaactccgaattatgatgagatggtgaaaaaccctcaaaaggcatatttgagaacaattacaccaaaatatcaaaccctaattgatctt 9606475  T
Q  354 tccgttatagaaatattgtcaaggcacgcttctgatgaagtgtaccttggagagag 409  Q
    || || || || |||||||| || || |||||||||||| | ||||||||||||||    
T  9606476 tctgtgattgagatattgtctagacatgcttctgatgaaatctaccttggagagag 9606531  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 203
Target Start/End: Original strand, 36926276 - 36926404
Alignment:
Q  75 ggtcacggtgataagaaaaacgagccatggtggcctaagatgcaagctcgtgaagagctagtcgaagtttgcactactgtcatatggattgcttcagctc 174  Q
    ||||| ||||| |||||| | ||||| |||||||| ||||||||  |||  ||||||||  | |||  |||||||| | | |||||||||||||||||||    
T  36926276 ggtcatggtgacaagaaagatgagccttggtggccaaagatgcatactctcgaagagctgattgaaacttgcactattattatatggattgcttcagctc 36926375  T
Q  175 ttcacgcagctgttaattttggacagtat 203  Q
    | || || || || || ||||||||||||    
T  36926376 tccatgctgcagtcaactttggacagtat 36926404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 46709315 - 46709271
Alignment:
Q  75 ggtcacggtgataagaaaaacgagccatggtggcctaagatgcaa 119  Q
    |||||||| || |||||||||||||| |||||||| |||||||||    
T  46709315 ggtcacggcgacaagaaaaacgagccttggtggccaaagatgcaa 46709271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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