View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9351_low_33 (Length: 224)
Name: NF9351_low_33
Description: NF9351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9351_low_33 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 39475857 - 39475650
Alignment:
| Q |
1 |
agggacattgaactcattggcaacattgatcatggtggtgcagaacatgtcaacaacgaaggcggcgaggtgtccatgttgtccttctctagtagtgagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39475857 |
agggacattgaactcattggcaacattgatcatggtggtgcagaacatgtcaacaacgaaggcggcgaggtgtccatgttgtccttctctagtagtgagg |
39475758 |
T |
|
| Q |
101 |
ttggagacagcttgttttacgtttggtttctgagcttcgaggagagctgtcatggaagagaaacctggatcggtgtttgggggaagagaaacttctggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39475757 |
ttggagacagcttgttttacgtttggtttctgagcttcgaggagagctgtcatggaagagaaacctggatcggtgtttgggggaagagaaacttctggaa |
39475658 |
T |
|
| Q |
201 |
ggttgatg |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
39475657 |
ggttgatg |
39475650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 39483608 - 39483405
Alignment:
| Q |
1 |
agggacattgaactcattggcaacattgatcatggtggtgcagaacatgtcaacaacgaaggcggcgaggtgtccatgttgtccttctctagtagtgagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39483608 |
agggacattgaactcattggcaacatcaatcatggtggtgcagaacatgtcaacaacgaaggcggagaggtgtccatgttgtccttctctagtagtgagg |
39483509 |
T |
|
| Q |
101 |
ttggagacagcttgttttacgtttggtttctgagcttcgaggagagctgtcatggaagagaaacctggatcggtgtttgggggaagagaaacttctggaa |
200 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||| |||||||| | |||| || || || ||||| ||||||||||||| || |||||||| |
|
|
| T |
39483508 |
ttggagacagcttgtattatgtttggtttctgagcttcaaggagagcgttgatggcag---aaactagatcgaagtttgggggaagataacattctggaa |
39483412 |
T |
|
| Q |
201 |
ggttgat |
207 |
Q |
| |
|
||||||| |
|
|
| T |
39483411 |
ggttgat |
39483405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 29 - 208
Target Start/End: Complemental strand, 39451323 - 39451144
Alignment:
| Q |
29 |
atcatggtggtgcagaacatgtcaacaacgaaggcggcgaggtgtccatgttgtccttctctagtagtgaggttggagacagcttgttttacgtttggtt |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||| ||||| || |||| ||| |||||||||||| || || |||||||| || ||||||| |
|
|
| T |
39451323 |
atcatggtggtgcagaacatgtcaacaacgatggtggcgaggactccattttctcctcctccagtagtgaggttagaaacggcttgtttgacatttggtt |
39451224 |
T |
|
| Q |
129 |
tctgagcttcgaggagagctgtcatggaagagaaacctggatcggtgtttgggggaagagaaacttctggaaggttgatg |
208 |
Q |
| |
|
||||||||||||||||||| | |||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39451223 |
tctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggaggaagagaaacttctggaaggttgatg |
39451144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 29 - 208
Target Start/End: Complemental strand, 39486788 - 39486609
Alignment:
| Q |
29 |
atcatggtggtgcagaacatgtcaacaacgaaggcggcgaggtgtccatgt---tgtccttctctagtagtgaggttggagacagcttgttttacgtttg |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
39486788 |
atcatggtggtgcagaacatgtcaacaacgaaggcggcaaggtgtccaggtggttgtccttctctagtagtgaggttggatacagcttgtttgacgtttg |
39486689 |
T |
|
| Q |
126 |
gtttctgagcttcgaggagagctgtcatggaagagaaacctggatcggtgtttgggggaagagaaacttctggaaggttgatg |
208 |
Q |
| |
|
||||||||||||| |||||||| ||||| | |||| ||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39486688 |
gtttctgagcttcaaggagagcgttcatgaca---aaacgtggttcggtgtttgggggaagagaacattctggaaggttgatg |
39486609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 39470597 - 39470782
Alignment:
| Q |
17 |
ttggcaacattgatcatggtggtgcagaacatgtcaacaacgaaggcggcgaggtgtccatgttgtccttctctagtagtgaggttggagacagcttgtt |
116 |
Q |
| |
|
|||||||||| |||||| | ||||||||||||||||||| || ||||||||| ||||||||||| |||| ||||||||||||||||| |||||||| |
|
|
| T |
39470597 |
ttggcaacatcaatcatgtttgtgcagaacatgtcaacaatgacagcggcgaggggtccatgttgt---tctccagtagtgaggttggagatagcttgtt |
39470693 |
T |
|
| Q |
117 |
ttacgtttggtttctgagcttcgaggagagctgtcatggaagagaaacctggatcggtgtttgggggaagagaaacttctggaaggttgatg |
208 |
Q |
| |
|
| ||||||| ||| ||||||||||||||||| |||| | |||||||||| | | ||||| ||| |||||||||||||||||||||| |
|
|
| T |
39470694 |
tgacgtttgctttatgagcttcgaggagagcgttcat---atccgaacctggatcagaggttgggagaacagaaacttctggaaggttgatg |
39470782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 39472381 - 39472180
Alignment:
| Q |
1 |
agggacattgaactcattggcaacattgatcatggtggtgcagaacatgtcaacaacgaaggcggcgaggtgtccatgttgtccttctctagtagtgagg |
100 |
Q |
| |
|
||||||| |||||| |||||||||| |||||| | |||||||||||||||||||| || ||||| ||| ||||| || || ||| ||| ||||| |
|
|
| T |
39472381 |
agggacagagaactctttggcaacatcaatcatgtttgtgcagaacatgtcaacaacaaaagcggcaaggactccatttt---ctgatctggtaatgagg |
39472285 |
T |
|
| Q |
101 |
ttggagacagcttgttttacgtttggtttctgagcttcgaggagagctgtcatggaagagaaacctggatcggtgtttgggggaagagaaacttctggaa |
200 |
Q |
| |
|
|| || || ||||||| |||||||||||||||||||||||||| || ||||| |||| |||| |||| |||||||||| ||||||| |||||||| |
|
|
| T |
39472284 |
ttagatactacttgtttgacgtttggtttctgagcttcgaggagcgcagtcat---agagggaccttgatctgtgtttggggcaagagaacattctggaa |
39472188 |
T |
|
| Q |
201 |
ggttgatg |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
39472187 |
ggttgatg |
39472180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 208
Target Start/End: Complemental strand, 39454975 - 39454783
Alignment:
| Q |
10 |
gaactcattggcaacattgatcatggtggtgcagaacatgtcaacaacgaaggcggcgaggtgtccatgttgtccttctctagtagtgaggttggagaca |
109 |
Q |
| |
|
|||||| |||||||||| ||||||| |||||| |||||||||||||||| || |||||| |||| ||| |||| | |||| ||||||| || || |
|
|
| T |
39454975 |
gaactctttggcaacatcaatcatggctgtgcaggacatgtcaacaacgaaagctgcgaggactccac-ttg--cttcaccagtaatgaggttagatacg |
39454879 |
T |
|
| Q |
110 |
gcttgttttacgtttggtttctgagcttcgaggagagctgtcatggaagagaaacctggatcggtgtttgggggaagagaaacttctggaaggttgatg |
208 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| |||| | |||| ||| || |||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
39454878 |
gcttgtttgacgtttggtttctgagcttcaaggtgagcggacatg---gaggaaactggattagtgtttgggggaagagagcattctggaaggttgatg |
39454783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 38 - 208
Target Start/End: Complemental strand, 39460561 - 39460394
Alignment:
| Q |
38 |
gtgcagaacatgtcaacaacgaaggcggcgaggtgtccatgttgtccttctctagtagtgaggttggagacagcttgttttacgtttggtttctgagctt |
137 |
Q |
| |
|
|||||||||||||||||||| ||||| | |||| |||||||| | || |||||||||| || || || |||||||| ||||||| ||||||||||| |
|
|
| T |
39460561 |
gtgcagaacatgtcaacaacaaaggctgtgagggttccatgtttttctctagtagtagtgagattagatacggcttgtttgacgtttgatttctgagctt |
39460462 |
T |
|
| Q |
138 |
cgaggagagctgtcatggaagagaaacctggatcggtgtttgggggaagagaaacttctggaaggttgatg |
208 |
Q |
| |
|
|||||| ||| |||| | || ||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39460461 |
cgaggaaagccatcat---tctggaagttggttcgatgtttgggggaagagaaacttctggaaggttgatg |
39460394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 39464451 - 39464559
Alignment:
| Q |
97 |
gaggttggagacagcttgttttacgtttggtttctgagcttcgaggagagctgtcatggaagagaaacctggatcggtgtttgggggaagagaaacttct |
196 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||||| ||||| || |||||||| |||| || | |||||||||| | | || ||||||||||||||||| |
|
|
| T |
39464451 |
gaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcat---agcggaacctggatcagaggtttggggaagagaaacttct |
39464547 |
T |
|
| Q |
197 |
ggaaggttgatg |
208 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39464548 |
ggaaggttgatg |
39464559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 39458146 - 39458259
Alignment:
| Q |
29 |
atcatggtggtgcagaacatgtcaacaacgaaggcggcgaggtgtccatgttgtccttctctagtagtgaggttggagacagcttgttttacgtttggtt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| || || ||| ||||| || | | || |||| |||||||||||| |||| ||| |||||||||| |
|
|
| T |
39458146 |
atcatggtggtgcagaacatgtcaacaatgaatgcagctaggactccattttctggtgctttagt---gaggttggagacggcttttttgacgtttggtt |
39458242 |
T |
|
| Q |
129 |
tctgagcttcgaggaga |
145 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
39458243 |
tctgagctttgaggaga |
39458259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 43312386 - 43312426
Alignment:
| Q |
29 |
atcatggtggtgcagaacatgtcaacaacgaaggcggcgag |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43312386 |
atcatggtggtgcagaacatgtcaacaacgaaggcagcgag |
43312426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 39464395 - 39464440
Alignment:
| Q |
17 |
ttggcaacattgatcatggtggtgcagaacatgtcaacaacgaagg |
62 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
39464395 |
ttggcaacatcaatcatgttggtgcagaacatgtcaacaacgaagg |
39464440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University