View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9351_low_36 (Length: 213)
Name: NF9351_low_36
Description: NF9351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9351_low_36 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 17530389 - 17530177
Alignment:
| Q |
1 |
ttttgtatcaatggatttaatggcgaatactctcttatcagctggagcatcaccagcaatggttcattcactcgaagagattcatgaattcactccacgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17530389 |
ttttgtatcaatggatttaatggcgaatactctcttatcagctggtgcatcacctgcaatggttcattcactcgaagagattcatgaattcactccacgt |
17530290 |
T |
|
| Q |
101 |
gtcagtgctctctgtcttaatgttggaacactctcatcttcttctcttccttctatgatagctgctgctaatctatgctctcagttgaatatcccttggg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
17530289 |
gtcagtgctctctgtcttaatgttggaacactctcatcttcttctcttcctgctatgatagctgctgctaagctatgctctcagttggatatcccttggg |
17530190 |
T |
|
| Q |
201 |
ttcttgatcctgt |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
17530189 |
ttcttgatcctgt |
17530177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 17656151 - 17656359
Alignment:
| Q |
5 |
gtatcaatggatttaatggcgaatactctcttatcagctggagcatcaccagcaatggttcattcactcgaagagat-tcatgaattcactccacgtgtc |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| || |
|
|
| T |
17656151 |
gtatcaatggatttaatggcgaatactctcttatcagctggagcatcaccagcaatggttcattcactcgaagagatatca-gaattcactccacgagta |
17656249 |
T |
|
| Q |
104 |
agtgctctctgtcttaatgttggaacactctcatcttcttctcttccttctatgatagctgctgctaatctatgctctcagttgaatatcccttgggttc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17656250 |
agtgctctctgtcttaatgttggaacactctcatcttcttctcttcctgctatgatagctgctgctaagctatgctctcagttgaatatcccttgggttc |
17656349 |
T |
|
| Q |
204 |
ttgatcctgt |
213 |
Q |
| |
|
|||||||||| |
|
|
| T |
17656350 |
ttgatcctgt |
17656359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University