View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9351_low_6 (Length: 421)
Name: NF9351_low_6
Description: NF9351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9351_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 1898142 - 1898549
Alignment:
| Q |
1 |
gttaaaactagtaaacaacatacaaaagagttatttcatatctagcttgaagcttatacttttagcattgtcatctgaagagagttggtgtaacatcaaa |
100 |
Q |
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| T |
1898142 |
gttaaaactagtaaacaacatacaaaagagttatttcatatctagcttgaagcttatacttttagcattgtcatctgaagagagttggtgtaacatcaaa |
1898241 |
T |
|
| Q |
101 |
cctctagtacaatttgataccttttgtaactcaaggattacacaacaatgtatactgctccactatatgtataccttttataaactac---actgctttg |
197 |
Q |
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| T |
1898242 |
cctctagtacaatttgataccttttgtaactcaaggattacacaacaatgtatactgctccactatatgtataccttttgtaaactactccactgctttg |
1898341 |
T |
|
| Q |
198 |
ttcattccatttagaatctaggagttcatcatattaagttattatggacttcttttctcgaatttttaggataatttgtttcttgctatggtcttaacca |
297 |
Q |
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| T |
1898342 |
ttcattccatttagaatctaggagttcatcatattaagttattatggacttcttttctcgaatttttaggataatttgtttcttgctatggtcttaacca |
1898441 |
T |
|
| Q |
298 |
tcataattactgaccaaaaagtttattaaaaataaatcattaacattgttttgtttcacatcaaaatagaaactatggataaataagagacttatcaacc |
397 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1898442 |
tcataattactgaccaaaaagtttattaaaaataaaccattaacattgttttgtttcacatcaaaatagaaactatggataaataagagacttatcaacc |
1898541 |
T |
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| Q |
398 |
atcaaagt |
405 |
Q |
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|||||||| |
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| T |
1898542 |
atcaaagt |
1898549 |
T |
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