View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9351_low_7 (Length: 416)
Name: NF9351_low_7
Description: NF9351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9351_low_7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 17 - 416
Target Start/End: Original strand, 39227985 - 39228384
Alignment:
| Q |
17 |
gacatcaagagggagtgaacaattgaactcattattgtaagcatcaagaacttcaagctctttcaaatgagagaatttccaacttagatttccattgaac |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227985 |
gacaccaagagggagtgaacaattgaactcattattgtaagcatcaagaacttcaagctctttcaaatgagagaatttccaacttagatttccattgaac |
39228084 |
T |
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| Q |
117 |
atgttgttggatatgttgaggaatctcaagtttgatagttttgtgatggaagatgaaaaagttccagaaatattcaagtttgatatatctagtgacacaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
39228085 |
atgttgttggatatgttgaggaatctcaagtttgatagttttgtgatggaagatgaaaaagttccagaaacattcaagtttgatatatccagtgacacaa |
39228184 |
T |
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| Q |
217 |
cagaactattgtttgtgtcacattgaataccataccaagtagtacaaagggacatgtagttagagatattccaactttttaaagaagttttggattcaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39228185 |
cagaactattgtttgtgtcacattgaataccataccaagtagtacaaagggacatgtagttagagatattccaactttttaaagaagttttggattcaaa |
39228284 |
T |
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| Q |
317 |
atcctgtttgagagaaactaagatagaagcttgtgttttcaaagacataggaagtgatgatgatgaagaaacagaaacagaaagagtaagaaagagggta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39228285 |
atcctgtttgagagaaactaagatagaagcttgtgttttcaaagacataggaagtgatgatgatgaagaaacagaaacagaaagagtaagaaagagggta |
39228384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 416
Target Start/End: Original strand, 25547184 - 25547586
Alignment:
| Q |
17 |
gacatcaagagggagtgaacaattgaactcattattgtaagcatcaagaacttcaagctctttcaaatgagagaatttccaacttagatttccattgaac |
116 |
Q |
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|||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25547184 |
gacaccaagaggtagtgaacaattgaactcattgttgtaagcatcaagaacttcaagctctttcaaatgagagaatttccaacttagatttccattgaac |
25547283 |
T |
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| Q |
117 |
atgttgttggatatgttgaggaatctcaagtttgatagttttgtgatggaagatgaaaaagttccagaaatattcaagtttgatatatctagtgacacaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
25547284 |
atgttgttggatatgttgaggaatctcaagtttgatagttttgtgatggaagatgaaaaagttccagaaacattcaagtttgatatatctagtgacaaaa |
25547383 |
T |
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| Q |
217 |
cagaactattgtttgtgtcacattgaataccataccaagtagtacaaagggacatgtagttagagatattccaactttttaaagaagttttggattcaaa |
316 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
25547384 |
cagaactattgtttgtgtcacattgaatatcataccaagtagtacaaagggacatgtagttggagatattccaactctttaaagaagttttggattcaaa |
25547483 |
T |
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| Q |
317 |
atcctgtttgagagaaactaagatagaagcttgtgttttcaaagacataggaagtgatgatgat---gaagaaacagaaacagaaagagtaagaaagagg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
25547484 |
atcctgtttgagagaaactaagatagaagcttgtgttttcaaagacataggaagtgatgatgatgaagaagaaacaaaaacagaaagagtaagaaagagg |
25547583 |
T |
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| Q |
414 |
gta |
416 |
Q |
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||| |
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| T |
25547584 |
gta |
25547586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 361
Target Start/End: Complemental strand, 16732931 - 16732800
Alignment:
| Q |
233 |
gtcacattgaataccataccaagtagtacaaagggacatgtagttagagatattccaactttttaaagaagttttgga------ttcaaaatcctgtttg |
326 |
Q |
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|||||||||||| |||||||| ||||||||| |||||||| ||||| || |||||||| |||||||||| || || ||||||||||||||| |
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| T |
16732931 |
gtcacattgaattccatacca---agtacaaagtgacatgtaattagacatgttccaactacttaaagaagtgttagaagaaggttcaaaatcctgtttc |
16732835 |
T |
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| Q |
327 |
agagaaactaagatagaagcttgtgttttcaaaga |
361 |
Q |
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| T |
16732834 |
attgaaactaagattgaagcttgatttttcaaaga |
16732800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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