View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9351_low_9 (Length: 409)
Name: NF9351_low_9
Description: NF9351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9351_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 15 - 402
Target Start/End: Original strand, 5946233 - 5946620
Alignment:
| Q |
15 |
ggacatcaatattcttaggcaccggtatcttcctccaagcaagaagcttcaatagtgttgacttgcccattccattcggcccaatcaaaccataccgttt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5946233 |
ggacatcaatattcttaggcaccggtatcttcctccaagcaagaagcttcaatagtgttgacttgcccattccattcggcccaatcaaaccataccgttt |
5946332 |
T |
|
| Q |
115 |
tccatgagatatctttactgaagtattcttcagaagttctttaccccgagcagacacagaaaaattttctattgttatatctttgacattagcatcagca |
214 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5946333 |
tccatgagatatctttacagaagtattcttcagaagttctttaccccgagcagacacagaaaaattttctattgttatatctttgacattagcatcagca |
5946432 |
T |
|
| Q |
215 |
ccatcgtctccatcaagcactgaagcccgacttccaatgacaacggtgaaagcatcacgatcatcccgaagagcttctttctttgcctgttcagccacat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5946433 |
ccatcgtctccatcaagcactgaagcccgacttccaatgacaacggtgaaagcatcacgatcatcccgaagagcttctttctttgcctgttcagccacat |
5946532 |
T |
|
| Q |
315 |
gggcagctaaaatatctttcttttcacgctttttcaactctttttcagcaatagacacctcaagtggcttcaaatcgggcctatgctt |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5946533 |
gggcagctaaaatatctttcttttcacgctttttcaactctttttcagcaatagacacctcaagtggcttcaaatcaggcctatgctt |
5946620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 15 - 402
Target Start/End: Complemental strand, 31717289 - 31716902
Alignment:
| Q |
15 |
ggacatcaatattcttaggcaccggtatcttcctccaagcaagaagcttcaatagtgttgacttgcccattccattcggcccaatcaaaccataccgttt |
114 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31717289 |
ggacatcaatattcttaggtaccggtatcttcctccaagcaagaagcttcaaaagcgttgacttgcccattccattcggcccaatcaaaccataacgttt |
31717190 |
T |
|
| Q |
115 |
tccatgagatatctttactgaagtattcttcagaagttctttaccccgagcagacacagaaaaattttctattgttatatctttgacattagcatcagca |
214 |
Q |
| |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31717189 |
tccatgggatatcttcactgaagtattcttcagaagttctttaccccgagcagccacagaaaaattttctatcgttatatctttgacattagcatcagca |
31717090 |
T |
|
| Q |
215 |
ccatcgtctccatcaagcactgaagcccgacttccaatgacaacggtgaaagcatcacgatcatcccgaagagcttctttctttgcctgttcagccacat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
31717089 |
ccatcgtctccatcaagcactgaagcccgacttccaattacaacagtgaaagcatcacgatcatccctaagagcttccttctttgcctgttcagccacat |
31716990 |
T |
|
| Q |
315 |
gggcagctaaaatatctttcttttcacgctttttcaactctttttcagcaatagacacctcaagtggcttcaaatcgggcctatgctt |
402 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31716989 |
gggcagctaaaatatctttcttttctcgctttttcaactctttttcagcaatagacacctcaagtggcttcaaatctggcctatgctt |
31716902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 384
Target Start/End: Original strand, 28619009 - 28619378
Alignment:
| Q |
15 |
ggacatcaatattcttaggcaccggtatcttcctccaagcaagaagcttcaatagtgttgacttgcccattccattcggcccaatcaaaccataccgttt |
114 |
Q |
| |
|
|||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28619009 |
ggacgtcaatattcttaggtactggtatcttcctccaagcaagaagcttcaaaagtgttgacttgcccattccattcggcccaagcaaaccataccgttt |
28619108 |
T |
|
| Q |
115 |
tccatgagatatctttactgaagtattcttcagaagttctttaccccgagcagacacagaaaaattttctattgttatatctttgacattagcatcagca |
214 |
Q |
| |
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||||||||||||||| ||||| | |||||||||||||||||| || ||||||||||||||||| || ||||| ||||||||||||||||||||| |||| |
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| T |
28619109 |
tccatgagatatcttcactgacgcattcttcagaagttctttgccacgagcagacacagaaaatttatctatcattatatctttgacattagcattagca |
28619208 |
T |
|
| Q |
215 |
ccatcgtctccatcaagcactgaagcccgacttccaatgacaacggtgaaagcatcacgatcatcccgaagagcttctttctttgcctgttcagccacat |
314 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||| || |
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| T |
28619209 |
ccatcgtctccatcaagaaccgaagcccgacttccaatgacaacagtgaaagcatcacgatcatctttaagagcttctttttttgcctgttcagccaaat |
28619308 |
T |
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| Q |
315 |
gggcagctaaaatatctttcttttcacgctttttcaactctttttcagcaatagacacctcaagtggctt |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28619309 |
gggcagctaaaatatctttcttttcacgctttttcaactcttttgcagcaatagacacctcaagtggctt |
28619378 |
T |
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