View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9352_low_1 (Length: 536)
Name: NF9352_low_1
Description: NF9352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9352_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 225 - 519
Target Start/End: Original strand, 20613838 - 20614131
Alignment:
| Q |
225 |
tggcagaggcgcggttgttgcaactactggagtagcggtttgcactagagaagatcataatcgaggaatctatgggatttcatatacatgttattgaact |
324 |
Q |
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| T |
20613838 |
tggcagaggcgcggttgttgcaactattggagtagcagtttgcactagagaagatcataatcgaggaatctatgggatttcatatacacgttattgaact |
20613937 |
T |
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| Q |
325 |
agggtagaattgggattgagatttatattccataacagagagagtgtaagagattattcacaatgctttaaagcttattttttattctctgattgttgaa |
424 |
Q |
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| T |
20613938 |
agggtagaattgggattgagatttatgttccataacagagagagtgtaagagattattcacaa-gctttaaagcttgttttttattttctgatcgttgaa |
20614036 |
T |
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| Q |
425 |
tattacattgaattgagactttaatctgtaaggtatataactaaaactaactttataagtttgttacaaggatattgttatgctacacctatact |
519 |
Q |
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| T |
20614037 |
tattacattgaattgagtttttaatctgtaagctatataactaaaactaactttataagtttgttacaaggatagtgttatgctacacctatact |
20614131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 20613571 - 20613780
Alignment:
| Q |
17 |
atatgcatcattctcttgatcattgattagaagaagatggcaagtgcaattgatcaacttggaaacagttttagaggaaagatgaaagtctttttggttt |
116 |
Q |
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| T |
20613571 |
atatgcatcattctcttgatcattgattagaagaagatggcaagtgcaattgatcaacttggaaacagttttagaggaaagatgaaagtctttttggttt |
20613670 |
T |
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| Q |
117 |
tcaaacctgtaaattgaggatattattgtctaggcagatacttgacaacatatggaaaacaaaatacttacaattcctacttgatcataatcaaggcaga |
216 |
Q |
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| T |
20613671 |
tcaaacctgtaaattgaggatattattgtcttggcagatacttgacaacatttggaaaagaaaatacttaccattcctacttgatcataatcaaggcaga |
20613770 |
T |
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| Q |
217 |
agtagagatg |
226 |
Q |
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| T |
20613771 |
agtagagatg |
20613780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 30117216 - 30117265
Alignment:
| Q |
48 |
agaagatggcaagtgcaattgatcaacttggaaacagttttagaggaaag |
97 |
Q |
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| T |
30117216 |
agaagatgacaagtactatggatcaacttggaaacagttttggaggaaag |
30117265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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