View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9352_low_15 (Length: 238)

Name: NF9352_low_15
Description: NF9352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9352_low_15
NF9352_low_15
[»] chr4 (12 HSPs)
chr4 (16-221)||(24289715-24289920)
chr4 (23-218)||(48162616-48162810)
chr4 (22-206)||(10737840-10738023)
chr4 (22-206)||(10951609-10951792)
chr4 (22-218)||(26961765-26961959)
chr4 (22-218)||(33459879-33460075)
chr4 (51-160)||(49978008-49978119)
chr4 (22-97)||(48162812-48162887)
chr4 (22-97)||(33459803-33459878)
chr4 (22-97)||(10737764-10737839)
chr4 (22-97)||(10951533-10951608)
chr4 (22-97)||(24289916-24289996)
[»] chr3 (16 HSPs)
chr3 (22-221)||(38453613-38453811)
chr3 (22-218)||(10242755-10242950)
chr3 (22-203)||(10765139-10765320)
chr3 (98-203)||(42195794-42195898)
chr3 (98-203)||(49153201-49153305)
chr3 (22-97)||(38453537-38453612)
chr3 (22-97)||(42195693-42195768)
chr3 (22-97)||(49153331-49153406)
chr3 (82-218)||(11844244-11844378)
chr3 (22-97)||(10242679-10242754)
chr3 (90-162)||(17652304-17652379)
chr3 (23-97)||(17653472-17653548)
chr3 (45-147)||(15332465-15332569)
chr3 (172-206)||(38453871-38453905)
chr3 (24-97)||(17653550-17653623)
chr3 (16-49)||(49153302-49153335)
[»] chr7 (4 HSPs)
chr7 (22-203)||(3815621-3815801)
chr7 (69-203)||(347254-347387)
chr7 (25-123)||(7609551-7609651)
chr7 (85-160)||(26382276-26382350)
[»] chr6 (9 HSPs)
chr6 (22-218)||(8661283-8661478)
chr6 (22-160)||(6099663-6099803)
chr6 (58-211)||(21195459-21195624)
chr6 (85-210)||(21788144-21788271)
chr6 (22-97)||(8661207-8661282)
chr6 (85-160)||(24413903-24413978)
chr6 (51-160)||(1108487-1108600)
chr6 (173-211)||(6099600-6099637)
chr6 (173-211)||(25345966-25346003)
[»] chr2 (9 HSPs)
chr2 (22-218)||(31003957-31004151)
chr2 (22-209)||(23335363-23335548)
chr2 (112-221)||(35089245-35089353)
chr2 (98-203)||(13457523-13457627)
chr2 (22-97)||(13457653-13457728)
chr2 (22-97)||(23335549-23335624)
chr2 (24-97)||(31004152-31004225)
chr2 (22-97)||(23335625-23335700)
chr2 (22-69)||(35089199-35089246)
[»] chr8 (7 HSPs)
chr8 (16-218)||(32892483-32892684)
chr8 (54-211)||(10701736-10701892)
chr8 (124-218)||(5546856-5546949)
chr8 (22-97)||(32892680-32892755)
chr8 (22-141)||(5546734-5546850)
chr8 (87-160)||(39733039-39733112)
chr8 (173-211)||(39733136-39733173)
[»] chr1 (5 HSPs)
chr1 (16-221)||(31053492-31053694)
chr1 (98-203)||(25386031-25386135)
chr1 (85-218)||(38148454-38148585)
chr1 (22-119)||(4281265-4281366)
chr1 (22-97)||(31053690-31053764)
[»] scaffold0208 (2 HSPs)
scaffold0208 (18-212)||(7836-8026)
scaffold0208 (22-93)||(8028-8099)
[»] scaffold0012 (1 HSPs)
scaffold0012 (21-218)||(171240-171436)
[»] chr5 (5 HSPs)
chr5 (78-209)||(19064156-19064290)
chr5 (98-203)||(28529920-28530024)
chr5 (69-218)||(12690771-12690919)
chr5 (22-97)||(28529819-28529894)
chr5 (16-49)||(28529890-28529923)
[»] scaffold0236 (1 HSPs)
scaffold0236 (69-218)||(1323-1471)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 24289920 - 24289715
Alignment:
Q  16 aatactttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatacatttacatatattgcata 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||  |||| ||||||||||||| |||||| |||||    
T  24289920 aatactttaagtatgaatacaaactcacgaatttgaaagaagatgcaagtcacaaatcacaccaatgcgtgtacgacaatacatttaaatatatcgcata 24289821  T
Q  116 aaagcaacaacaaatatagcatgaaatatatccaaaatgcatgataatgacaaagaattattgtagaaaacttaataacaataaactcaaacatcatgat 215  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24289820 aaagcaacaacaaacatagcatgaaatatattcaaaatgcatgataatgacaaagaattattgtagaaaacttaataacaataaactcaaacatcatgat 24289721  T
Q  216 catact 221  Q
    ||||||    
T  24289720 catact 24289715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 23 - 218
Target Start/End: Complemental strand, 48162810 - 48162616
Alignment:
Q  23 taagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatacatttacatatattgcataaaagcaa 122  Q
    |||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||||||||| ||||||| ||||    
T  48162810 taagtgtgaagacaaaatcacgaatttgaaagaagatgtaagtcacaaatcacaccaatgtgtgtatgacaatacatttacatatatcgcataaatgcaa 48162711  T
Q  123 caacaaatatagcatgaaatatatccaaaatgcatgataatgacaaagaattattgtagaaaacttaataacaataaactcaaacatcatgatcat 218  Q
    ||||||| |||||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||||||| || |||||||| |||||    
T  48162710 caacaaacatagcatgaaatatattcaaaatgcatgataa-gacaaaatattattgtagaaaacttaataacaataaagtctaacatcataatcat 48162616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 206
Target Start/End: Original strand, 10737840 - 10738023
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatacatttacatatattgcataaaagca 121  Q
    ||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||| || |||||||||  ||||||||||    
T  10737840 ttaagtgtgaagaaaaactcacgaatttgaaagaagatgcaagtcacaaatcacaccaatgtgtgtatgacaataaatctacatatatcacataaaagca 10737939  T
Q  122 acaacaaatatagcatgaaatatatccaaaatgcatgataatgacaaagaattattgtagaaaacttaataacaataaactcaaa 206  Q
    |||||||| |||||||||||||||| ||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||    
T  10737940 acaacaaacatagcatgaaatatattcaaaatgcatgataa-gacaaaatattattgtagaaaacttaataacaataaactcaaa 10738023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 206
Target Start/End: Original strand, 10951609 - 10951792
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatacatttacatatattgcataaaagca 121  Q
    ||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||| || |||||||||  ||||||||||    
T  10951609 ttaagtgtgaagaaaaactcacgaatttgaaagaagatgcaagtcacaaatcacaccaatgtgtgtatgacaataaatctacatatatcacataaaagca 10951708  T
Q  122 acaacaaatatagcatgaaatatatccaaaatgcatgataatgacaaagaattattgtagaaaacttaataacaataaactcaaa 206  Q
    |||||||| |||||||||||||||| ||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||    
T  10951709 acaacaaacatagcatgaaatatattcaaaatgcatgataa-gacaaaatattattgtagaaaacttaataacaataaactcaaa 10951792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 26961765 - 26961959
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatacatttacatatattgcataaaagca 121  Q
    ||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||| ||||||| |||    
T  26961765 ttaagtgtgaagaaaaactcacgaatttgaaagaagatgcaagtcacaagtcacatcaatgtgtgtatgacaatacatttacatatatcgcataaaggca 26961864  T
Q  122 acaacaaatatagcatgaaatatatccaaaatgcatgataatgacaaagaattattgtagaaaacttaataacaataaactcaaacatcatgatcat 218  Q
    |||||||| ||| ||| |||||||| ||||||||||||||| ||||||  |||||||||| ||||||||||||||||||||| |||||||| |||||    
T  26961865 acaacaaacatatcattaaatatattcaaaatgcatgataa-gacaaaacattattgtag-aaacttaataacaataaactctaacatcataatcat 26961959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 33459879 - 33460075
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatacatttacatatattgcataaaagca 121  Q
    ||||||||||| | |||||||||||||||||| || ||||||| ||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||    
T  33459879 ttaagtgtgaagaaaaactcacgaatttgaaaaaatatgcaagtcacaaattacatcaatgtgtgtatgaaaatacatttacatatatcgcataaaagca 33459978  T
Q  122 acaacaaatatagcatgaaatatatccaaaatgcatgataatgacaaagaattattgtagaaaa-cttaataacaataaactcaaacatcatgatcat 218  Q
    ||||||||  ||||||||||||||| ||||||||||||||| ||||||  ||||||  |||||| |||||||||||||||||  |||||||| |||||    
T  33459979 acaacaaacgtagcatgaaatatattcaaaatgcatgataa-gacaaaatattattaaagaaaaccttaataacaataaactataacatcataatcat 33460075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 49978119 - 49978008
Alignment:
Q  51 aaagaagatgcaag--ccacaaatcacatcaatgtatgtatgacaatacatttacatatattgcataaaagcaacaacaaatatagcatgaaatatatcc 148  Q
    ||||||||||||||  ||| |||  ||| ||| || ||||||||||| |||||||| ||||   |||||||||||||||||||||||||||||||| |||    
T  49978119 aaagaagatgcaagtcccaaaaacaacaccaacgtgtgtatgacaatgcatttacaaatatcatataaaagcaacaacaaatatagcatgaaatatgtcc 49978020  T
Q  149 aaaatgcatgat 160  Q
    ||||||||||||    
T  49978019 aaaatgcatgat 49978008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 48162887 - 48162812
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatac 97  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||| |||||| |||||||||||||    
T  48162887 ttaagtgtgaagacaaattcacgaatttgaaagaagatgaaagtcacaaatcacaccaatgtgtgtatgacaatac 48162812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 33459803 - 33459878
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatac 97  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||| || ||| |||||||||||||    
T  33459803 ttaagtgtgaagacaaattcacgaatttgaaagaagatgaaagtcacaaatcacaccagtgtgtgtatgacaatac 33459878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 10737764 - 10737839
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatac 97  Q
    ||||||||||| ||||| ||||||||||| ||||||||| ||| ||||||||||| |||||| || ||||||||||    
T  10737764 ttaagtgtgaagacaaattcacgaatttggaagaagatgaaagtcacaaatcacagcaatgtgtgaatgacaatac 10737839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 10951533 - 10951608
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatac 97  Q
    ||||||||||| ||||| ||||||||||| ||||||||| ||| ||||||||||| |||||| || ||||||||||    
T  10951533 ttaagtgtgaagacaaattcacgaatttggaagaagatgaaagtcacaaatcacagcaatgtgtgaatgacaatac 10951608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 24289996 - 24289916
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaag-----aagatgcaagccacaaatcacatcaatgtatgtatgacaatac 97  Q
    ||||||||||| ||||| ||||||||||||||      || ||| ||| ||||||||||| |||||| |||||||||||||    
T  24289996 ttaagtgtgaagacaaattcacgaatttgaaaagaaaaaaaatgaaagtcacaaatcacaccaatgtgtgtatgacaatac 24289916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 38453613 - 38453811
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatacatttacatatattgcataaaagca 121  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||    
T  38453613 ttaagtgtgaagacaaaatcacgaatttgaaagaagatgtaagtcacaaatcacaccaatgtgtgtatgacaatacatttacatatatcgcataaaagca 38453712  T
Q  122 acaacaaatatagcatgaaatatatccaaaatgcatgataatgacaaagaattattgtagaaaacttaataacaataaactcaaacatcatgatcatact 221  Q
    |||||||| |||||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||| |||||||||||| |||||||| ||||||||    
T  38453713 acaacaaacatagcatgaaatatattcaaaatgcatgataa-gacaaaatattattgtagaaaacttaagaacaataaactctaacatcataatcatact 38453811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 10242755 - 10242950
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatacatttacatatattgcataaaagca 121  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||    
T  10242755 ttaagtgtgaagacaaaatcacgaatttgaaagaagatgtaagtcacaaatcacaccaatgtgtgtatgacaatacatttacatatatcgcataaaagca 10242854  T
Q  122 acaacaaatatagcatgaaatatatccaaaatgcatgataatgacaaagaattattgtagaaaacttaataacaataaactcaaacatcatgatcat 218  Q
    |||||||| |||||||||||||||| ||||||||||||||| || |||  |||||||||||||||||||||||||||||||| |||| ||| |||||    
T  10242855 acaacaaacatagcatgaaatatattcaaaatgcatgataa-gaaaaaatattattgtagaaaacttaataacaataaactctaacaccataatcat 10242950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 10765139 - 10765320
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaa-gccacaaatcacatcaatgtatgtatgacaatacatttacatatattgcataaaagc 120  Q
    |||||||| || ||||| ||| ||||||||||||||||| || | |||| |||||| |||||| |||| || ||||||||||||||||| ||||||||||    
T  10765139 ttaagtgttaagacaaattcatgaatttgaaagaagatgaaaagtcacatatcacaccaatgtgtgtaggagaatacatttacatatatagcataaaagc 10765238  T
Q  121 aacaacaaatatagcatgaaatatatccaaaatgcatgataatgacaaagaattattgtagaaaacttaataacaataaactc 203  Q
    ||||||||| |||||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||    
T  10765239 aacaacaaacatagcatgaaatatattcaaaatgcatgataa-gacaaaatattattgtagaaaacttaataacaataaactc 10765320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 42195794 - 42195898
Alignment:
Q  98 atttacatatattgcataaaagcaacaacaaatatagcatgaaatatatccaaaatgcatgataatgacaaagaattattgtagaaaacttaataacaat 197  Q
    ||||| |||||| ||||||||||| ||||||| |||||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  42195794 atttaaatatatcgcataaaagcagcaacaaacatagcatgaaatatattcaaaatgcatgataa-gacaaaatattattgtagaaaacttaataacaat 42195892  T
Q  198 aaactc 203  Q
    ||||||    
T  42195893 aaactc 42195898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 49153305 - 49153201
Alignment:
Q  98 atttacatatattgcataaaagcaacaacaaatatagcatgaaatatatccaaaatgcatgataatgacaaagaattattgtagaaaacttaataacaat 197  Q
    ||||| |||||| ||||||||||| ||||||| |||||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  49153305 atttaaatatatcgcataaaagcagcaacaaacatagcatgaaatatattcaaaatgcatgataa-gacaaaatattattgtagaaaacttaataacaat 49153207  T
Q  198 aaactc 203  Q
    ||||||    
T  49153206 aaactc 49153201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 38453537 - 38453612
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatac 97  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||| |||||| |||||||||||||    
T  38453537 ttaagtgtgaagacaaattcacgaatttgaaagaagatgaaagtcacaaatcacaccaatgtgtgtatgacaatac 38453612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 42195693 - 42195768
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatac 97  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||| |||||| |||||||||||||    
T  42195693 ttaagtgtgaagacaaattcacgaatttgaaagaagatgaaagtcacaaatcacaccaatgtgtgtatgacaatac 42195768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 49153406 - 49153331
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatac 97  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||| |||||| |||||||||||||    
T  49153406 ttaagtgtgaagacaaattcacgaatttgaaagaagatgaaagtcacaaatcacaccaatgtgtgtatgacaatac 49153331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 11844244 - 11844378
Alignment:
Q  82 gtatgtatgacaatacatttacatatattgcataaaagcaacaacaaatatagcatgaaatatatccaaaatgcatgataatgacaaa-gaattattgta 180  Q
    |||||||||||||| |||||||| ||||  ||||||||| |||||||| |||||||||||  ||||| || ||||||||  | |||||   |||||||||    
T  11844244 gtatgtatgacaatgcatttacacatatcacataaaagcgacaacaaacatagcatgaaaattatccgaattgcatgat--taacaaatctattattgta 11844341  T
Q  181 gaaaacttaataacaataaactcaaacatcatgatcat 218  Q
    | ||||||||||||||||||||  |||||||| |||||    
T  11844342 g-aaacttaataacaataaactttaacatcataatcat 11844378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 10242679 - 10242754
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatac 97  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||| | |||||| |||||| ||||||    
T  10242679 ttaagtgtgaagacaaattcacgaatttgaaagaagatgaaagtcacaaatcaaaccaatgtgtgtatggcaatac 10242754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 17652379 - 17652304
Alignment:
Q  90 gacaatacatttacatatattgcataaaag---caacaacaaatatagcatgaaatatatccaaaatgcatgataa 162  Q
    ||||| |||||||||||||| |||||||||   |||||||||| ||| |||||||||||||||||||||| |||||    
T  17652379 gacaagacatttacatatatcgcataaaagtgacaacaacaaacatatcatgaaatatatccaaaatgcaggataa 17652304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 17653548 - 17653472
Alignment:
Q  23 taagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaa--tgtatgtatgacaatac 97  Q
    |||||||| | ||||||||| ||||||||||||||||||||| ||||||||||| |||  |||| ||||||||||||    
T  17653548 taagtgtgcagacaaactcatgaatttgaaagaagatgcaagtcacaaatcacaccaatgtgtacgtatgacaatac 17653472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 15332569 - 15332465
Alignment:
Q  45 aatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatacatttacatatattgcataaaagc--aacaacaaatatagcatgaaat 142  Q
    ||||| ||| |||||||||| || |||||||| |||| |||| ||||||||||||||||| | ||   |||||| |  | ||||||||||||||||||||    
T  15332569 aatttaaaaaaagatgcaagtcaaaaatcacaccaatttatggatgacaatacatttacagacatcatataaaaacatatcaacaaatatagcatgaaat 15332470  T
Q  143 atatc 147  Q
    |||||    
T  15332469 atatc 15332465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 38453871 - 38453905
Alignment:
Q  172 attattgtagaaaacttaataacaataaactcaaa 206  Q
    |||||||||||||||||||||||||||||||||||    
T  38453871 attattgtagaaaacttaataacaataaactcaaa 38453905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 17653623 - 17653550
Alignment:
Q  24 aagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatac 97  Q
    ||||||||| ||||| |||||||||| |||||||||| ||| |  ||||||||  ||||| |||||||||||||    
T  17653623 aagtgtgaagacaaattcacgaatttaaaagaagatgaaagtcgtaaatcacactaatgtgtgtatgacaatac 17653550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 49153335 - 49153302
Alignment:
Q  16 aatactttaagtgtgaatacaaactcacgaattt 49  Q
    ||||||||||||||||| ||||||||||||||||    
T  49153335 aatactttaagtgtgaagacaaactcacgaattt 49153302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 3815621 - 3815801
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatacatttacatatattgcataaaagca 121  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||    
T  3815621 ttaagtgtgaagacaaattcacgaatttgaaagaagatgaaagtcacaaatcacaccaatgtgtgtatgagaatacatttacatatattgcataaaagca 3815720  T
Q  122 acaacaaatatagcatgaaatatatccaaaatgcatgataatgacaaagaattattgtagaaaacttaataacaataaactc 203  Q
    |||||||| |||||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||    
T  3815721 acaacaaacatagcatgaaatatattcaaaatgcatgataa-gacaaaatattattgtagaaaacttaataacaataaactc 3815801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 69 - 203
Target Start/End: Complemental strand, 347387 - 347254
Alignment:
Q  69 aaatcacatcaatgtatgtatgacaatacatttacatatattgcataaaagcaacaacaaatatagcatgaaatatatccaaaatgcatgataatgacaa 168  Q
    |||| ||| |||||| |||||||||||| ||||||| |||| ||||||||||||||||| | |||||||||||||||| ||||||||||||||| |||||    
T  347387 aaataacaccaatgtgtgtatgacaatatatttacagatatcgcataaaagcaacaacagacatagcatgaaatatattcaaaatgcatgataa-gacaa 347289  T
Q  169 agaattattgtagaaaacttaataacaataaactc 203  Q
    |  ||||||||||||||||||||||||||||||||    
T  347288 aatattattgtagaaaacttaataacaataaactc 347254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 7609651 - 7609551
Alignment:
Q  25 agtgtgaatacaaactcac--gaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatacatttacatatattgcataaaagcaa 122  Q
    |||||||| ||||| ||||  ||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||| | ||||| || ||||||||    
T  7609651 agtgtgaagacaaattcacatgaatttgaaagaagatgcaagtcacaaatcacaccaatgtgtgtatgacaatacatttataaatattacacaaaagcaa 7609552  T
Q  123 c 123  Q
    |    
T  7609551 c 7609551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 26382350 - 26382276
Alignment:
Q  85 tgtatgacaatacatttacatatattgcataaaagcaacaacaaatatagcatgaaatatatccaaaatgcatgat 160  Q
    ||||||||||| |||||||| ||||  ||||||||  ||| |||| ||| |||||||||||| |||||||||||||    
T  26382350 tgtatgacaat-catttacaaatatcacataaaagtgacatcaaacataacatgaaatatattcaaaatgcatgat 26382276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 7e-67; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 8661283 - 8661478
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatacatttacatatattgcataaaagca 121  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||    
T  8661283 ttaagtgtgaagacaaaatcacgaatttgaaagaagatgtaagtcacaaatcacaccaatgtgtgtatgacaatacatttacatatatcgcataaaagca 8661382  T
Q  122 acaacaaatatagcatgaaatatatccaaaatgcatgataatgacaaagaattattgtagaaaacttaataacaataaactcaaacatcatgatcat 218  Q
    |||||||| |||||||||||||||| ||||||||||||||| || |||  |||||||||||||||||||||||||||||||| |||| ||| |||||    
T  8661383 acaacaaacatagcatgaaatatattcaaaatgcatgataa-gaaaaaatattattgtagaaaacttaataacaataaactctaacaccataatcat 8661478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 6099803 - 6099663
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaa--tttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatacatttacatatattgcataaaag 119  Q
    ||||||||||| ||||| |||| ||  |||||||||||||||| | || |||||||| |||||| |||||||||||||||||| | |||| |||||||||    
T  6099803 ttaagtgtgaagacaaattcacaaaaatttgaaagaagatgcatgtcaaaaatcacaccaatgtgtgtatgacaatacatttagagatatcgcataaaag 6099704  T
Q  120 caacaacaaatatagcatgaaatatatccaaaatgcatgat 160  Q
    |||||||| | |||||||||||||| |||||||||||||||    
T  6099703 caacaacataaatagcatgaaatatgtccaaaatgcatgat 6099663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 211
Target Start/End: Original strand, 21195459 - 21195624
Alignment:
Q  58 atgcaagccacaaatcacatcaatgtatgtatgacaatacatttacatatattgcataaaagcaacaacaa----atatagcatgaaatatatccaaaat 153  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||  |||||||||    ||||| |||||||||| || |||||    
T  21195459 atgcaagtcacaaatcacatcaatgtgtgtatgacaatacatttacatatatcgcataaagacaacaacaaacatatataacatgaaatatgtctaaaat 21195558  T
Q  154 gcatgat-------aatgaca--aagaattattgtagaaaacttaataacaataaactcaaacatca 211  Q
    |||||||       || || |  || ||||||||||| |||||||||||||||||||||||||||||    
T  21195559 gcatgattggaggaaaagaaaataaaaattattgtag-aaacttaataacaataaactcaaacatca 21195624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 210
Target Start/End: Original strand, 21788144 - 21788271
Alignment:
Q  85 tgtatgacaatacatttacatatattgcataaaagcaaca---acaaatatagcatgaaatatatccaaaatgcatgataatgacaaagaattattgtag 181  Q
    ||||||||||||||||||||||||| |||| ||| || ||   ||||| ||| |||||||||||||||||| ||||||||| ||||||  |||||||||     
T  21788144 tgtatgacaatacatttacatatatcgcatgaaaacatcatcaacaaacatatcatgaaatatatccaaaacgcatgataa-gacaaaatattattgtaa 21788242  T
Q  182 aaaacttaataacaataaactcaaacatc 210  Q
    | || |||||||||||||| |||||||||    
T  21788243 agaagttaataacaataaattcaaacatc 21788271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 8661207 - 8661282
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatac 97  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||| | |||||| |||||| ||||||    
T  8661207 ttaagtgtgaagacaaattcacgaatttgaaagaagatgaaagtcacaaatcaaaccaatgtgtgtatggcaatac 8661282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 24413978 - 24413903
Alignment:
Q  85 tgtatgacaatacatttacatatattgcataaaagcaacaacaaatatagcatgaaatatatccaaaatgcatgat 160  Q
    |||||||| || |||||||| ||||  ||||||||| |||||||| |||||||||||||| | |||||||||||||    
T  24413978 tgtatgacgatgcatttacaaatatcacataaaagcgacaacaaacatagcatgaaatatgttcaaaatgcatgat 24413903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 1108600 - 1108487
Alignment:
Q  51 aaagaagatgcaag-ccacaaatcacatcaatgtatgtatgacaatacatttacatatat-tgcataaaagcaacaaca---aatatagcatgaaatata 145  Q
    |||||||||||||| ||| |||||||| |||| | |||||||||||||||||||  || |  |||| |||||| || ||   ||||||||||||||||||    
T  1108600 aaagaagatgcaagtccaaaaatcacaccaatatgtgtatgacaatacatttaccgatgtcagcatgaaagcatcatcaattaatatagcatgaaatata 1108501  T
Q  146 tccaaaatgcatgat 160  Q
    | |||||||||||||    
T  1108500 t-caaaatgcatgat 1108487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 6099637 - 6099600
Alignment:
Q  173 ttattgtagaaaacttaataacaataaactcaaacatca 211  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  6099637 ttattgtagaaa-cttaataacaataaactcaaacatca 6099600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 25346003 - 25345966
Alignment:
Q  173 ttattgtagaaaacttaataacaataaactcaaacatca 211  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  25346003 ttattgtagaaa-cttaataacaataaactcaaacatca 25345966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 31004151 - 31003957
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatacatttacatatattgcataaaagca 121  Q
    ||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||    
T  31004151 ttaagtgtgaagaaaaactcacgaatttgaaagaagatgcaagtcacaaatcacatcaatgtgtgtatgacaatacatttacatatatcgcataaaggca 31004052  T
Q  122 acaacaaatatagcatgaaatatatccaaaatgcatgataatgacaaagaattattgtagaaaacttaataacaataaactcaaacatcatgatcat 218  Q
    |||||||| ||||||| |||||||| ||||||||||||||| ||||||  |||||||||| ||||||||||||||||||||| |||||||| |||||    
T  31004051 acaacaaacatagcattaaatatattcaaaatgcatgataa-gacaaaatattattgtag-aaacttaataacaataaactctaacatcataatcat 31003957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 23335548 - 23335363
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatacatttacatatattgcataaaagca 121  Q
    ||||||||||| | ||||| |||||||| |||||||||||||| ||||||||||| |||||| || ||||||||||||||||||||||  ||||||||||    
T  23335548 ttaagtgtgaagataaact-acgaattttaaagaagatgcaagtcacaaatcacaccaatgtgtgcatgacaatacatttacatatatcacataaaagca 23335450  T
Q  122 acaacaaatatagcatgaaatatatccaaaatgcatgataatgacaaagaattattgtagaaaacttaataacaataaactcaaacat 209  Q
    |||||||| | | |||||||||||| ||||||||||||||| || |||  |||||||||||||||||||||||||||||||| |||||    
T  23335449 acaacaaacaaaacatgaaatatattcaaaatgcatgataa-gataaaatattattgtagaaaacttaataacaataaactctaacat 23335363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 35089245 - 35089353
Alignment:
Q  112 cataaaagcaacaacaaatatagcatgaaatatatccaaaatgcatgataatgacaaagaattattgtagaaaacttaataacaataaactcaaacatca 211  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||||| ||||||  |||||||||||||||||||||||||||||||| |||||||    
T  35089245 cataaaagtaacaacaaacatagcatgaaatatattcaaaatgcatgataa-gacaaaatattattgtagaaaacttaataacaataaactctaacatca 35089343  T
Q  212 tgatcatact 221  Q
    | ||||||||    
T  35089344 taatcatact 35089353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 13457627 - 13457523
Alignment:
Q  98 atttacatatattgcataaaagcaacaacaaatatagcatgaaatatatccaaaatgcatgataatgacaaagaattattgtagaaaacttaataacaat 197  Q
    ||||| |||||| ||||||||||| ||||||| |||||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  13457627 atttaaatatatcgcataaaagcagcaacaaacatagcatgaaatatattcaaaatgcatgataa-gacaaaatattattgtagaaaacttaataacaat 13457529  T
Q  198 aaactc 203  Q
    ||||||    
T  13457528 aaactc 13457523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 13457728 - 13457653
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatac 97  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||| |||||| |||||||||||||    
T  13457728 ttaagtgtgaagacaaattcacgaatttgaaagaagatgaaagtcacaaatcacaccaatgtgtgtatgacaatac 13457653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 23335624 - 23335549
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatac 97  Q
    ||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| ||||   |||||||||||||    
T  23335624 ttaagtgtgaaaataaactcacgaatttgaaagaagatgcaagtcacaaatcacaccaataggtgtatgacaatac 23335549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 31004225 - 31004152
Alignment:
Q  24 aagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatac 97  Q
    ||||||||| ||||| |||||||||| |||||||||| ||| ||||||||||| |||||| |||||||||||||    
T  31004225 aagtgtgaagacaaattcacgaatttaaaagaagatgaaagtcacaaatcacaccaatgtgtgtatgacaatac 31004152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 23335700 - 23335625
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatac 97  Q
    ||||||||||| | ||| |||||||||| |||||||||| ||| ||||||||||| |||||| |||||||||||||    
T  23335700 ttaagtgtgaagaaaaattcacgaatttaaaagaagatgaaagtcacaaatcacaccaatgtgtgtatgacaatac 23335625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 35089199 - 35089246
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccaca 69  Q
    ||||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  35089199 ttaagtgtgaagacaaaatcacgaatttgaaagaagatgcaagtcaca 35089246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 32892684 - 32892483
Alignment:
Q  16 aatactttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatacatttacatatattgcata 115  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||  |||||||||| |||||| |||||||||||||||||| |||||| |||||    
T  32892684 aatactttaagtgtgaagacaaactcacaaatttgaaagaagatgcaagtaacaaatcacaccaatgtgtgtatgacaatacatttatatatatcgcata 32892585  T
Q  116 aaagcaacaacaaatatagcatgaaatatatccaaaatgcatgataatgacaaagaattattgtagaaaacttaataacaataaactcaaacatcatgat 215  Q
    || ||||| ||||| |||||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||||||| || |||||||| ||    
T  32892584 aatgcaactacaaacatagcatgaaatatattcaaaatgcatgataa-gacaaaatattattgtagaaaacttaataacaataaagtctaacatcataat 32892486  T
Q  216 cat 218  Q
    |||    
T  32892485 cat 32892483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 54 - 211
Target Start/End: Complemental strand, 10701892 - 10701736
Alignment:
Q  54 gaagatgcaagccacaaatcacatcaatgtatgtatgacaatacatttacatatattgcataaaagcaacaacaaatatagcatgaaatatatccaaaat 153  Q
    ||||||| ||| || |||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||    
T  10701892 gaagatgaaagtcagaaatcacaccaatgtgtgtatgacaatacatttacatatatcgcataaaagcaacaacaaacataacatgaaatatattcaaaat 10701793  T
Q  154 gcatgataatgacaaagaattattgtagaaaacttaataacaataaactcaaacatca 211  Q
    ||||||||| |||||   ||||||||||||||||||||||||||||||||||||||||    
T  10701792 gcatgataa-gacaagatattattgtagaaaacttaataacaataaactcaaacatca 10701736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 5546856 - 5546949
Alignment:
Q  124 aacaaatatagcatgaaatatatccaaaatgcatgataatgacaaagaattattgtagaaaacttaataacaataaactcaaacatcatgatcat 218  Q
    |||||| ||| |||||||||||| ||||||||||||||| ||||||  |||||||||||||||||||||||||||||||| |||| ||| |||||    
T  5546856 aacaaacataacatgaaatatattcaaaatgcatgataa-gacaaaatattattgtagaaaacttaataacaataaactctaacaccataatcat 5546949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 32892755 - 32892680
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatac 97  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||| || |||||||| |||||| |||||||||||||    
T  32892755 ttaagtgtgaagacaaattcacgaatttgaaagaagatgaaagtcataaatcacaccaatgtgtgtatgacaatac 32892680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 5546734 - 5546850
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaag-ccacaaatcacatcaatgtatgtatgacaatacatttacatatattgcataaaagc 120  Q
    ||||||||||| ||||| ||||||||||||||    ||| ||| ||| || ||||| |||||| |||||||||||| ||||||| |||| |||| |||||    
T  5546734 ttaagtgtgaagacaaattcacgaatttgaaa----atgtaagtccaaaattcacaccaatgtgtgtatgacaatatatttacagatatggcatgaaagc 5546829  T
Q  121 aacaacaaatatagcatgaaa 141  Q
    | ||||||| ||| |||||||    
T  5546830 atcaacaaacataacatgaaa 5546850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 160
Target Start/End: Original strand, 39733039 - 39733112
Alignment:
Q  87 tatgacaatacatttacatatattgcataaaagcaacaacaaatatagcatgaaatatatccaaaatgcatgat 160  Q
    ||||||||| |||||||| ||||  ||||||||| |||||||| |||||||||||  |||||| ||||||||||    
T  39733039 tatgacaatgcatttacaaatatcacataaaagcgacaacaaacatagcatgaaaattatccataatgcatgat 39733112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 39733136 - 39733173
Alignment:
Q  173 ttattgtagaaaacttaataacaataaactcaaacatca 211  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  39733136 ttattgtagaaa-cttaataacaataaactcaaacatca 39733173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 31053694 - 31053492
Alignment:
Q  16 aatactttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatacatttacatatattgcata 115  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||| |||||| |||| ||||||||||| | |||||| |||||    
T  31053694 aatactttaagtgtgaagacaaactcacaaatttgaaagaagatgcaagtcacaaatcacaccaatgtgtgtacgacaatacattgaaatatatcgcata 31053595  T
Q  116 aaagcaacaacaaatatagcatgaaatatatccaaaatgcatgataatgacaaagaattattgtagaaaacttaataacaataaactcaaacatcatgat 215  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||| |||||   |||||||||||||||||||||||||||||||| || || || ||    
T  31053594 aaagcaacaacaaacatagcatgaaatatattcaaaatgcatgataa-gacaa--tattattgtagaaaacttaataacaataaactctaatatgataat 31053498  T
Q  216 catact 221  Q
    ||||||    
T  31053497 catact 31053492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 25386031 - 25386135
Alignment:
Q  98 atttacatatattgcataaaagcaacaacaaatatagcatgaaatatatccaaaatgcatgataatgacaaagaattattgtagaaaacttaataacaat 197  Q
    ||||| ||||||  |||||||||||||||||| ||||||||||||||||  |||||||||||||| ||||||  |||||||||||||||||||||| |||    
T  25386031 atttaaatatatctcataaaagcaacaacaaacatagcatgaaatatatttaaaatgcatgataa-gacaaaatattattgtagaaaacttaataaaaat 25386129  T
Q  198 aaactc 203  Q
    ||||||    
T  25386130 aaactc 25386135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 85 - 218
Target Start/End: Original strand, 38148454 - 38148585
Alignment:
Q  85 tgtatgacaatacatttacatatattgcataaaagcaacaacaaatatagcatgaaatatatccaaaatgcatgataatgacaaaga-attattgtagaa 183  Q
    ||||||||||| |||||||| ||||  ||||||||| |||||||| |||||||||||   ||||||| ||||||||  | ||||| | |||||||||| |    
T  38148454 tgtatgacaatgcatttacaaatatcacataaaagcgacaacaaacatagcatgaaaatcatccaaattgcatgat--taacaaatatattattgtag-a 38148550  T
Q  184 aacttaataacaataaactcaaacatcatgatcat 218  Q
    |||||||||||||||||||| |||||||| |||||    
T  38148551 aacttaataacaataaactctaacatcataatcat 38148585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 4281265 - 4281366
Alignment:
Q  22 ttaagtgtgaatacaaactcac--gaatttgaaagaagatgcaagccacaaatc--acatcaatgtatgtatgacaatacatttacatatattgcataaa 117  Q
    |||| |||||| |||||| |||  |||||| |||||||||||||| || ||||   ||| |||||| ||||||||||| |||||||||||||  ||||||    
T  4281265 ttaattgtgaagacaaacccacaagaatttaaaagaagatgcaagtcaaaaattcaacaccaatgtgtgtatgacaatgcatttacatatatcacataaa 4281364  T
Q  118 ag 119  Q
    ||    
T  4281365 ag 4281366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 31053764 - 31053690
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatac 97  Q
    ||||||||||| ||||| |||||||||||||| || ||| |||  |||||||||| ||||||  ||||||||||||    
T  31053764 ttaagtgtgaagacaaattcacgaatttgaaa-aaaatgaaagttacaaatcacaccaatgtgagtatgacaatac 31053690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 8026 - 7836
Alignment:
Q  18 tactttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatacatttacatatattgcataaa 117  Q
    ||||||||||||||| |||||||||| ||||| |||||||||||||   |||||| ||| |||||| ||||||||||||||||||||||||| |||||||    
T  8026 tactttaagtgtgaagacaaactcacaaatttaaaagaagatgcaa---acaaattacaccaatgtgtgtatgacaatacatttacatatatcgcataaa 7930  T
Q  118 agcaacaacaaatatagcatgaaatatatccaaaatgcatgataatgacaaagaattattgtagaaaacttaataacaataaactcaaacatcat 212  Q
     ||||||||||| |||||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||||||| || ||||||||    
T  7929 tgcaacaacaaacatagcatgaaatatattcaaaatgcatgataa-gacaaaatattattgtagaaaacttaataacaataaagtctaacatcat 7836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 8099 - 8028
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgaca 93  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||| || |||||||| |||||| |||||||||    
T  8099 ttaagtgtgaagacaaattcacgaatttgaaagaagatgaaagtcataaatcacaccaatgtgtgtatgaca 8028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 21 - 218
Target Start/End: Original strand, 171240 - 171436
Alignment:
Q  21 tttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatacatttacatatattgcataaaagc 120  Q
    |||||||||||| |||||||||| ||||| ||| |||||||||| || |||||||  |||||| ||||||||||||||||||||||||| ||||||||||    
T  171240 tttaagtgtgaagacaaactcacaaatttaaaaaaagatgcaagtcataaatcactccaatgtgtgtatgacaatacatttacatatatagcataaaagc 171339  T
Q  121 aacaacaaatatagcatgaaatatatccaaaatgcatgataatgacaaagaattattgtagaaaacttaataacaataaactcaaacatcatgatcat 218  Q
    ||||||| | ||| |||||||||||| ||||||||||||||| ||||||  ||||||| |||||||| ||||||||||||||  |||||||| |||||    
T  171340 aacaacatacataacatgaaatatattcaaaatgcatgataa-gacaaaatattattgaagaaaactcaataacaataaactataacatcataatcat 171436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 78 - 209
Target Start/End: Original strand, 19064156 - 19064290
Alignment:
Q  78 caatgtatgtatgacaatacatttacatatattgcataaaagcaacaacaaata---tagcatgaaatatatccaaaatgcatgataatgacaaagaatt 174  Q
    |||||| || ||||||||||||||||| ||||  ||||||| |||||||||  |   ||||||||||||||||||||||||||||| | ||||||  |||    
T  19064156 caatgtgtgcatgacaatacatttacagatatcacataaaaacaacaacaagaaccatagcatgaaatatatccaaaatgcatgatcaagacaaaatatt 19064255  T
Q  175 attgtagaaaacttaataacaataaactcaaacat 209  Q
    |||||||||||||||||||||||||||||||||||    
T  19064256 attgtagaaaacttaataacaataaactcaaacat 19064290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 28529920 - 28530024
Alignment:
Q  98 atttacatatattgcataaaagcaacaacaaatatagcatgaaatatatccaaaatgcatgataatgacaaagaattattgtagaaaacttaataacaat 197  Q
    ||||| |||||| ||||||||||| ||||||| |||||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  28529920 atttaaatatatcgcataaaagcagcaacaaacatagcatgaaatatattcaaaatgcatgataa-gacaaaatattattgtagaaaacttaataacaat 28530018  T
Q  198 aaactc 203  Q
    ||||||    
T  28530019 aaactc 28530024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 69 - 218
Target Start/End: Original strand, 12690771 - 12690919
Alignment:
Q  69 aaatcacatcaatgtatgtatgacaatacatttacatatattgcataaaagcaacaacaaatatagcatgaaatatatccaaaatgcatgataatgacaa 168  Q
    |||| ||| ||||||||||||||||| | | ||||| |||| || | |||||| ||||||| |||||||||||||||| ||||||||||||||| || ||    
T  12690771 aaataacaccaatgtatgtatgacaacatagttacagatatcgcttgaaagcatcaacaaacatagcatgaaatatattcaaaatgcatgataa-gataa 12690869  T
Q  169 agaattattgtagaaaacttaataacaataaactcaaacatcatgatcat 218  Q
    |  || ||||||||||||||||||| ||||||||| |||| ||| |||||    
T  12690870 aatatcattgtagaaaacttaataataataaactctaacaccataatcat 12690919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 28529819 - 28529894
Alignment:
Q  22 ttaagtgtgaatacaaactcacgaatttgaaagaagatgcaagccacaaatcacatcaatgtatgtatgacaatac 97  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||| |||||| |||||||||||||    
T  28529819 ttaagtgtgaagacaaattcacgaatttgaaagaagatgaaagtcacaaatcacaccaatgtgtgtatgacaatac 28529894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 28529890 - 28529923
Alignment:
Q  16 aatactttaagtgtgaatacaaactcacgaattt 49  Q
    ||||||||||||||||| ||||||||||||||||    
T  28529890 aatactttaagtgtgaagacaaactcacgaattt 28529923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 69 - 218
Target Start/End: Complemental strand, 1471 - 1323
Alignment:
Q  69 aaatcacatcaatgtatgtatgacaatacatttacatatattgcataaaagcaacaacaaatatagcatgaaatatatccaaaatgcatgataatgacaa 168  Q
    |||| ||| ||||||||||||||||| | | ||||| |||| || | |||||| ||||||| |||||||||||||||| ||||||||||||||| || ||    
T  1471 aaataacaccaatgtatgtatgacaacatagttacagatatcgcttgaaagcatcaacaaacatagcatgaaatatattcaaaatgcatgataa-gataa 1373  T
Q  169 agaattattgtagaaaacttaataacaataaactcaaacatcatgatcat 218  Q
    |  || ||||||||||||||||||| ||||||||| |||| ||| |||||    
T  1372 aatatcattgtagaaaacttaataataataaactctaacaccataatcat 1323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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