View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9352_low_3 (Length: 518)
Name: NF9352_low_3
Description: NF9352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9352_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 8 - 503
Target Start/End: Complemental strand, 6207394 - 6206899
Alignment:
| Q |
8 |
gtagattattctgcttacattctgtttgataaaaaatagctcattttgttagccgatggtagatgaatctatagcaaacaacggatagactatctgatta |
107 |
Q |
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| T |
6207394 |
gtagattagtctgcttacattctgtttgataaaaaatagctcattttgttagccgatggtagatgaatctatagcaaataacggatagactatctgatta |
6207295 |
T |
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| Q |
108 |
aaatatttaaagtgtttagtaaaattaatcgataaagttaattacaaaatcttcttaaatgaaatttgcaggtcagtaatatcgacccttgtgctgaaga |
207 |
Q |
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| T |
6207294 |
aaatatttaaagtgtttagtaaaattaatcgataaagttaattacaaaatcttcttaaatgaaatttgcaggtcagtaatatcgacccttgtgctgaaga |
6207195 |
T |
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| Q |
208 |
ttataccgctgcctatttaaatctcccagaagttcaaaaggctcttcatgttaaacccataaaatggtctcattgcaggtacacactaaaataagttgta |
307 |
Q |
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| T |
6207194 |
ttataccgctgcctatttaaatctcccagaagttcaaaaggctcttcatgttaaacccataaaatggtctcattgcaggtacacactaaaataagttgta |
6207095 |
T |
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| Q |
308 |
attgtgttttattttcccacaatttcaaaatgcattaattgtaaatgctatagtatttctatgaatcaatgtctaatgctctttttcagtggtgtgggtt |
407 |
Q |
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| T |
6207094 |
attgtgttttattttcccacaatttcaaaatgcattaattgtaaatgctatagtatttctatgaatcaatgtctaatgctctttttcagtggtgtgggtt |
6206995 |
T |
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| Q |
408 |
ggacggatagtccaactagtattctaccaactataaatcagttaatatcaagtggtataagcatatggatatacaggtatgataaactttataaat |
503 |
Q |
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| T |
6206994 |
ggacagatagtccaactagtattctaccaactataaatcagttaatatcaagtggtataagcatatggatatacaggtatgataaactttataaat |
6206899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 145 - 291
Target Start/End: Complemental strand, 6214918 - 6214771
Alignment:
| Q |
145 |
ttaattacaaaat-cttcttaaatgaaatttgcaggtcagtaatatcgacccttgtgctgaagattataccgctgcctatttaaatctcccagaagttca |
243 |
Q |
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| T |
6214918 |
ttaattacaaaattcttcttaaatgaaatttgcaggtcagtaatgtcgacccttgtgctgaagattataccactacctatttaaatctcccagaagttca |
6214819 |
T |
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| Q |
244 |
aaaggctcttcatgttaaacccataaaatggtctcattgcaggtacac |
291 |
Q |
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| T |
6214818 |
aaaggctcttcatgttaaacgcacaaaatggtctccttgcaggtacac |
6214771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 191 - 503
Target Start/End: Complemental strand, 6177401 - 6177087
Alignment:
| Q |
191 |
gacccttgtgctgaagattataccgctgcctatttaaatctcccagaagttcaaaaggctcttcatgttaaacccataaaatggtctcattgcaggtaca |
290 |
Q |
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| T |
6177401 |
gacccttgttctgaagattatactaatgcttatttaaacctacctaaagttcaagaggctcttcatgttaaacccacaaaatggtcttcttgcaggtaca |
6177302 |
T |
|
| Q |
291 |
cactaaaataagttg-taattgtg---ttttattttcccacaatttcaaaatgcattaattgtaaatgctatagtatttctatgaatcaatgt--ctaat |
384 |
Q |
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| T |
6177301 |
c--taaatactgttgctaattatgatgttttattt-cctacaatttcaaaatgcatttacagtaaatgttgtactatttcc-tgaatcaatgtgtctaat |
6177206 |
T |
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| Q |
385 |
gctctttttcagtggtgtgggttggacggatagtccaactagtattctaccaactataaatcagttaatatcaagtggtataagcatatggatatacagg |
484 |
Q |
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| T |
6177205 |
ggtctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggattaatatcaagtggtataagcatatggatatacagg |
6177106 |
T |
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| Q |
485 |
tatgataaactttataaat |
503 |
Q |
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| T |
6177105 |
tatgatatactttataaat |
6177087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 377 - 486
Target Start/End: Complemental strand, 6214721 - 6214612
Alignment:
| Q |
377 |
tgtctaatgctctttttcagtggtgtgggttggacggatagtccaactagtattctaccaactataaatcagttaatatcaagtggtataagcatatgga |
476 |
Q |
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| T |
6214721 |
tgtctaatggtctttttcagtgatctgagttggacagatagtccagcaagtattctgccaactataaatggattaatatcaagtggtataagcatttgga |
6214622 |
T |
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| Q |
477 |
tatacaggta |
486 |
Q |
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| T |
6214621 |
tgtacaggta |
6214612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 6215030 - 6214942
Alignment:
| Q |
55 |
gttagccgatggtagatgaatctatagcaaacaacggatagactatctgattaaaatatttaaagtgtttagtaaaattaatcgataaagtt |
146 |
Q |
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| T |
6215030 |
gttagctgatggttgatgaacctataacaaataacggatagactatctgattaa---atttaaagtgttggataaaattaaacaataaagtt |
6214942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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