View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9352_low_4 (Length: 435)
Name: NF9352_low_4
Description: NF9352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9352_low_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 49016586 - 49016157
Alignment:
| Q |
1 |
acagaagtaacggtttttcggtgcacagtgagtatcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttcttta |
100 |
Q |
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| T |
49016586 |
acagaagtaactgtttttcggtgcacagtgagtatcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttcttta |
49016487 |
T |
|
| Q |
101 |
agtccaagcacttggtttgtccactcactagagaaaagacctcgtgaatcatactcttctttaaccttcaaaaacttacctgctttcttatacttatgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49016486 |
agtccaagcacttggtttgtccactcactagagaaaagacctcgtgaatcatactcttctttaaccttcaaaaacttacctgctttcttatacttacgga |
49016387 |
T |
|
| Q |
201 |
ttgctcccacaaatcctaagtttctatttttcccccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49016386 |
ttgctcccacaaatcctaagtttctatttttcccccaatgtggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaa |
49016287 |
T |
|
| Q |
301 |
aagcctaggagtcaatggatctttactacggtaatatgtgatgtcgaaattcacagcatcctctgtgtttcccaagtatgcactagaagttgtaacgtag |
400 |
Q |
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| T |
49016286 |
aagcctaggagtcaatggatctttactacggtaatatgtgatgtcgaaatccacagcat--tctgtgtttcccaagtatgcactagaagttgtaacgtag |
49016189 |
T |
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| Q |
401 |
cgcataaggattccattgtatagatctaagcc |
432 |
Q |
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| T |
49016188 |
cgcataaggattccattgtatagatctaagcc |
49016157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 14 - 435
Target Start/End: Original strand, 490181 - 490602
Alignment:
| Q |
14 |
tttttcggtgcacagtgagtatcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcactt |
113 |
Q |
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||||| |||| ||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
490181 |
ttttttggtgaacaatgactatcttttgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcactt |
490280 |
T |
|
| Q |
114 |
ggtttgtccactcactagagaaaagacctcgt-gaatcatactcttctttaaccttcaaaaacttacctgctttcttatacttatggattgctcccacaa |
212 |
Q |
| |
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| T |
490281 |
ggtctgtccaatcactagagaaaagtc-tcttcgggtcatatttctttttaaccttcaaaaacctatttgccttattatatttttttattgcccccacaa |
490379 |
T |
|
| Q |
213 |
atcctaagtttctatttttcccccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagt |
312 |
Q |
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|||||| ||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
490380 |
atcctatatttctattttttccccaatggggtaaccctccatatttgaacaatcctatttgttctatctcttcaattatatcttcataaagcctaggagt |
490479 |
T |
|
| Q |
313 |
caatggatctttactacggtaatatgtgatgtcgaaattcacagcatcctctgtgtttcccaagtatgcactagaagttgtaacgtagcgcataaggatt |
412 |
Q |
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||||||||||||||| ||||||||| ||||||| || | ||||||||| ||||| ||||||||||||||||||||||||||||| || ||||| |||||| |
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| T |
490480 |
caatggatctttactgcggtaatatatgatgtcaaattccacagcatcttctgtttttcccaagtatgcactagaagttgtaacataacgcatgaggatt |
490579 |
T |
|
| Q |
413 |
ccattgtatagatctaagccaca |
435 |
Q |
| |
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|||||||| | ||||||||||| |
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| T |
490580 |
ccattgtacaagtctaagccaca |
490602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 33 - 421
Target Start/End: Complemental strand, 9072257 - 9071869
Alignment:
| Q |
33 |
tatcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtttgtccactcactaga |
132 |
Q |
| |
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|||||||||| || |||||||| ||||| |||||||| |||| ||| ||||||||||| |||||||| | |||||||||||| | ||||| |||||| |
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| T |
9072257 |
tatcttgtgaacaaatacacaaaccttctaatgcacacccatttttcaatattgtcacaccttcttttattccaagcacttgatccgtccatgtactaga |
9072158 |
T |
|
| Q |
133 |
gaaaagacctcgtgaatcatactcttctttaaccttcaaaaacttacctgctttcttatacttatggattgctcccacaaatcctaagtttctatttttc |
232 |
Q |
| |
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|||||| ||| |||||||||| | ||||||||||||||||| || | | || ||||| | || |||| ||||| | | |||||||| || |
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| T |
9072157 |
gaaaagtccttgtgaatcatatttctctttaaccttcaaaaatttctcaatatctttgtactttttgaaaactccttcaaatgccacatttctattctta |
9072058 |
T |
|
| Q |
233 |
ccccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatggatctttactacggt |
332 |
Q |
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| T |
9072057 |
ccccaatgaggtaaccctccatacttgaaaattccaatttgttcaatctcttcaagaatgtcttcataaagcctaggagccattggatctttgctacgat |
9071958 |
T |
|
| Q |
333 |
aatatgtgatgtcgaaattcacagcatcctctgtgtttcccaagtatgcactagaagttgtaacgtagcgcataaggattccattgtat |
421 |
Q |
| |
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|||||||||| || || | | ||||||||| |||||| | ||| |||||||||| |||||| || ||||| || |||||||||||| |
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| T |
9071957 |
aatatgtgatatcaaagtctaatgcatcctcttggtttcctaggtaagcactagaagctgtaacataacgcattagaattccattgtat |
9071869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 224 - 341
Target Start/End: Complemental strand, 9059350 - 9059233
Alignment:
| Q |
224 |
ctatttttcccccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatggatctt |
323 |
Q |
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||||| ||||||||||| || |||||||||||||| || | ||| ||||| || |||||||||| | ||||||| ||||||||||||||| |||||||| |
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| T |
9059350 |
ctattcttcccccaatgaggcaaccctccatatttaaaaatccctatttgctcaatctcttcaaaaacgtcttcataaagcctaggagtcattggatctt |
9059251 |
T |
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| Q |
324 |
tactacggtaatatgtga |
341 |
Q |
| |
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| T |
9059250 |
tgctacggtaatacgtga |
9059233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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