View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9352_low_5 (Length: 428)
Name: NF9352_low_5
Description: NF9352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9352_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 407
Target Start/End: Complemental strand, 27381531 - 27381128
Alignment:
| Q |
18 |
tatagaaaaataagagcaagatttcgacccaagctcttacctaatagacaaatcttcaccaagaaaaccaatatttataatatttcaattttaatgatgc |
117 |
Q |
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| T |
27381531 |
tatagaaaaataagagcaagatttcaacccaagctcatacctaatagacaaatcttcaccaagaaaaccactatttataatatttcaattttaatgatgc |
27381432 |
T |
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| Q |
118 |
aatatactccta--------------aatttcaatatttaaattccacatgtcactataaatatcataatcatatttaatactcctactacctctacaag |
203 |
Q |
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| T |
27381431 |
aatatactcctatcctactactcctaaatttcaatatttaaattccacatgtcactataaatatcataatcatatttaatactcctactacctctacaag |
27381332 |
T |
|
| Q |
204 |
actagaaaacaatactacctcnnnnnnnnnnnntgaaatttctcttcctctgttagaaaaacacatggcacataaacacaaacacactctttctctgtct |
303 |
Q |
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| T |
27381331 |
actagaaaacaatactacctcaaaaataaaaaatgaaatttctcttcctctgttagaaaaacacatggcacataaacacaaacacactctttctctgtct |
27381232 |
T |
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| Q |
304 |
ttgatgttagaagctttaaatgcttcactttactctctctgtctctgacactaaccacaagacataaaagaagcattcaataaaacacaattattttatg |
403 |
Q |
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| T |
27381231 |
ttgatgttagaagctttaaatgcttcactttactctctctgtctctgacactaaccacaagacataaaagaagcattcaataaaacacaattattttatg |
27381132 |
T |
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| Q |
404 |
cttt |
407 |
Q |
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|||| |
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| T |
27381131 |
cttt |
27381128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 63 - 160
Target Start/End: Complemental strand, 27389744 - 27389649
Alignment:
| Q |
63 |
agacaaatcttcaccaagaaaaccaatatttataatatttcaattttaatgatgcaatatactcctaaatttcaatatttaaattccacatgtcacta |
160 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| | ||||||||| |||||||| |||| |||||||||||||||||| ||||||| |
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| T |
27389744 |
agacaaatcttcaccaaaaaaaccaatatttataatatttcaatataaatgatgca--atactcctgaattccaatatttaaattccacacgtcacta |
27389649 |
T |
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