View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9352_low_8 (Length: 311)
Name: NF9352_low_8
Description: NF9352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9352_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 34204078 - 34203796
Alignment:
| Q |
11 |
cacagagaaatagtaactagttatttttcttattctacgtagggtacaagttagactcataagattaatgaacacagtgatttacagttttatttcttct |
110 |
Q |
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| T |
34204078 |
cacagagaaatagtaactagttatttttcttattctacgtagggtacaagttagactcataagattaatgaacacagtgatttacagttttatttcttct |
34203979 |
T |
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| Q |
111 |
actttttcaaaatgtatataggttgagatttatacaagataagtctataaaacatgtcatgttttttgtaaaggtgattacatttttaactagggccctt |
210 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
34203978 |
actttttcaaaatgtatataggttgagattcatacaagataagtctataagacatgtcatgt-ttttgtaaaggtgattacatttttaactagtgccctt |
34203880 |
T |
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| Q |
211 |
gtttttattgatatctccattttttatgnnnnnnncagtttaagttagttgagctttaagattcattatgattagaacagatttt |
295 |
Q |
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| T |
34203879 |
ctttttattgatatctccattttttatgaaaaaaa-agtttaagttagttgagctttaagattcattatgattagaacagatttt |
34203796 |
T |
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