View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9352_low_9 (Length: 305)
Name: NF9352_low_9
Description: NF9352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9352_low_9 |
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| [»] scaffold0421 (1 HSPs) |
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Alignment Details
Target: scaffold0421 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 282
Target Start/End: Complemental strand, 5802 - 5540
Alignment:
| Q |
17 |
gaatgaacatggtacatacatgcatattgaacaaatgatatacaccaaatacctccactttaaacaataaggatgtttgttagttgtgaacttgttatat |
116 |
Q |
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| T |
5802 |
gaatgaacatggtacatacatgcat---gaacaaatgatatacaccaaatacctccactttaaacaataaggatgtttgttagttgtgaacttgttatat |
5706 |
T |
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| Q |
117 |
ccatcactttcatcatagcaggaataagcaaacctaatcaaaaactcaaatggagtattcacaaaatttaagggattgaatgaaaacgtaaacttattac |
216 |
Q |
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| T |
5705 |
ccatcactttcatcatagctggaataagcaaacctaatcaaaaactcaaatggagtattcacaaaatttaagggattgaatgaaaatgtaaacttgttac |
5606 |
T |
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| Q |
217 |
taatatgattgaaatcaattttttaaattagcgtaaaattaggaaaattatggcaacttggaatca |
282 |
Q |
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| T |
5605 |
taatatgattgaaatcaattttttaaattagcgtaaaattaggaaaattatggcaacttggaatca |
5540 |
T |
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Target: chr2 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 89 - 282
Target Start/End: Original strand, 15929826 - 15930019
Alignment:
| Q |
89 |
atgtttgttagttgtgaacttgttatatccatcactttcatcatagcaggaataagcaaacctaatcaaaaactcaaatggagtattcacaaaatttaag |
188 |
Q |
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| T |
15929826 |
atgtttgttagttgtgaacttgttatatccatcactttcatcatagctggaataagcaaacctaatcaaaaactcaaatcgagtattcacaaaatttaag |
15929925 |
T |
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| Q |
189 |
ggattgaatgaaaacgtaaacttattactaatatgattgaaatcaattttttaaattagcgtaaaattaggaaaattatggcaacttggaatca |
282 |
Q |
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| T |
15929926 |
ggattgaatgaaaatgtaaacttattactaatatgattgaaatcaattttttaaattagcgtaaaattaggaaaattatggcaacttagaatca |
15930019 |
T |
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