View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9353_high_1 (Length: 959)
Name: NF9353_high_1
Description: NF9353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9353_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 746; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 746; E-Value: 0
Query Start/End: Original strand, 22 - 942
Target Start/End: Complemental strand, 36704844 - 36703935
Alignment:
| Q |
22 |
ccgaattgctgcataaattcttctaagatacatttctatcttgatcatgaaccacatccaacatcgacaaagaacttgatccatttttcgcaaagtaagt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36704844 |
ccgaattgctgcataaattcttctaagatacatttctatcttgatcatgaaccaaatccaacatcgacaaagaacttgatccatttttcgcaaagtaagt |
36704745 |
T |
|
| Q |
122 |
ttactaaaagcaatattttcatttgtgactaacacatgaattgaataatttttcttactggcatggctcttatactatgaaatttgagtagtgatcagaa |
221 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36704744 |
ctactaaaagcaatatttttatttgtgactaacacatgaattgaataatttttcttactgacatggctcttatactatgaaatttgagtagtgatcagaa |
36704645 |
T |
|
| Q |
222 |
caggaaaaatagcaaagtatgattatgttaatgcagcacaaaatatacaacactatggacaaagggttcctccaacatatgacatgacaaaaatctcaag |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36704644 |
caggaaaaatagcaaagtatgattatgttaatgcagcacaaaatatacaacactatggacaaagggttcctccaacatatgacatgacaaaaatctcaag |
36704545 |
T |
|
| Q |
322 |
tgaattcccactttttcttggctatggagggaaggannnnnnnatctgatgtacaagatgtgaaggttttgctcaatgatctcagtgatcaagatgctaa |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36704544 |
tgaattcccactttttcttggctatggagggaatga-ttttttatctgatgtacaagatgtgaaggttttgctcaatgatctcagtgatcaagatgctaa |
36704446 |
T |
|
| Q |
422 |
caagcgcgtggtattgttcaaggatgattatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccatgatagcttttttc |
521 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36704445 |
caagcgcgtggtattgttcaaggatgattatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccataatagcttttttc |
36704346 |
T |
|
| Q |
522 |
aactctcattgattttactaccacgatatatttattatattgtacttcaaataatgtattgtagcatataggagtagttttttcatttagttgagattca |
621 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36704345 |
aactctcattgattttactaccaagatatatttattatattgtactacaaataatgtattgtagtatataggagtagttttttcatttagttgagattca |
36704246 |
T |
|
| Q |
622 |
ttcgagtgnnnnnnnnctcaactgagtatgttagatttccatcaaaattaaaataaaaagaatatagactgtgttattcttctccatatttaatcacaaa |
721 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36704245 |
ttcgagtgttttttttctcaactgagtatgttagatttccatcaaaattaaaataaaaagaatatagactgtgttattcttctccatatttaatcacaaa |
36704146 |
T |
|
| Q |
722 |
agttgtcttgttttttcaacttagatagatcggttgaatttctccatttttcactaacctcacactttcattgcggtttactatttttaaacaaccatta |
821 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36704145 |
agttgtcttgttttttcaacttagatatatcggtcgaatttctccatttttcactaacctcacactttcattgcggtttactatttttaaacaaccatta |
36704046 |
T |
|
| Q |
822 |
-ttttgtgttattcttacatgagataataagcgaaagaagttnnnnnnnnnnnnnnnnnnncatacatttgatagtgcaaattcatggtactatttgata |
920 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36704045 |
tttttgtgttattcttacatgagataataagcgaaagaagtt----------aaaaaaaaacat-catttgatagtgcaaattcatagtactatttgata |
36703957 |
T |
|
| Q |
921 |
acaaaactgaatgcacgtgatg |
942 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
36703956 |
acaaaactgaatgcacgtgatg |
36703935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 188 - 539
Target Start/End: Complemental strand, 36711828 - 36711475
Alignment:
| Q |
188 |
ctcttatactatgaaatttgagtagtgatcagaacaggaaaaatagcaaagtatgattatgttaatgcagcacaaaatatacaacactatggacaaaggg |
287 |
Q |
| |
|
||||| || ||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
36711828 |
ctcttgtattatgaaatttgagtagtgatcagaaaaggacaaatatcaaagtatgattatgttgatgaagcacaaaatttacaacactatggacaaaggg |
36711729 |
T |
|
| Q |
288 |
ttcctccaacatatgacatgacaaaaatctcaagtgaattcccactttttcttggctatggagggaaggannnnnnnatctgatgtacaagatgtgaagg |
387 |
Q |
| |
|
|||||||||| |||||| |||| |||||| | ||||||||||| |||||||| ||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
36711728 |
ttcctccaacttatgacgtgaccaaaatccctagtgaattccccctttttctcagctatggagggaaagatactct-atctgatgtacaagatgtgaagg |
36711630 |
T |
|
| Q |
388 |
ttttgctcaatgatctcagtgat---caagatgctaacaagcgcgtggtattgttcaaggatgattatgcacatgctgattttatagcgggtgacaatgc |
484 |
Q |
| |
|
||||| ||||||| |||| | || || ||||||| ||| || ||||||||||| |||||||||||||||||| |||||||||| |||||| ||||| |
|
|
| T |
36711629 |
ttttgttcaatgaactcaataatgaccatgatgctagcaaccgtgtggtattgtttaaggatgattatgcacatcttgattttatattgggtgataatgc |
36711530 |
T |
|
| Q |
485 |
taaacaagtcgtttatgatcccatgatagcttttttcaactctcattgattttac |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36711529 |
taaacaagtcgtttatgatcccatgatagcttttttcaacgctcattgattttac |
36711475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 165 - 523
Target Start/End: Original strand, 36664589 - 36664946
Alignment:
| Q |
165 |
aataatttttcttactggcatggctcttatactatgaaatttgagtagtgatcagaacaggaaaaatagcaaagtatgattatgttaatgcagcacaaaa |
264 |
Q |
| |
|
|||||||||| ||| || | |||||||| || ||| |||||||| |||||| |||||||||||||| ||||||||||||||||| || ||||||||| |
|
|
| T |
36664589 |
aataattttttttattgacttggctcttgtattataaaatttgaatagtgacgagaacaggaaaaatcacaaagtatgattatgttcatcaagcacaaaa |
36664688 |
T |
|
| Q |
265 |
tatacaacactatggacaaagggttcctccaacatatgacatgacaaaaatctcaagtgaattcccactttttcttggctatggagggaaggannnnnnn |
364 |
Q |
| |
|
| ||| |||||||||||| | ||||||||| |||||| |||| |||||| | | || ||||| |||||||| || ||||||| | || |
|
|
| T |
36664689 |
tctactacactatggacatcgaactcctccaacttatgacttgaccaaaatccctaccgagttccctctttttctaggtgttggagggcaaga-tatgtt |
36664787 |
T |
|
| Q |
365 |
atctgatgtacaagatgtgaaggttttgctcaatgatctcagtgatcaagatgctaacaagcgcgtggtattgttcaaggatgattatgcacatgctgat |
464 |
Q |
| |
|
|||||| ||||| |||||||| ||||||| ||||| |||| ||||| ||| ||||||||| ||||| | ||| || ||| ||||||||||| ||| |
|
|
| T |
36664788 |
atctgacgtacaggatgtgaatcttttgcttaatgacctcaaggatcatgattctaacaagctagtggtgtcgttgaacgataattatgcacatttagat |
36664887 |
T |
|
| Q |
465 |
tttatagcgggtgacaatgctaaacaagtcgtttatgatcccatgatagcttttttcaa |
523 |
Q |
| |
|
|| || |||| | ||||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
36664888 |
ttcattgcggctatcaatgctaaacaactcatttatgatcctatgatagcttttttcaa |
36664946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 36712355 - 36712259
Alignment:
| Q |
25 |
aattgctgcataaattcttctaagatacatttctatcttgatcatgaaccacatccaacatcgacaaagaacttgatccatttttcgcaaagtaagt |
121 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||||||||| ||||||||||| |||||| | ||||||||||||||||||||||| ||| |||||| |
|
|
| T |
36712355 |
aattgctgcataaattcttctaaggttgattcctatcttgaccatgaaccacaaccaacagcaacaaagaacttgatccatttttctcaatgtaagt |
36712259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 36664271 - 36664377
Alignment:
| Q |
22 |
ccgaattgctgcataaattcttctaagatacatttctatcttgatcatgaaccacatccaacatcgacaaagaacttgatccatttttcgcaaagtaagt |
121 |
Q |
| |
|
|||||||| ||| |||||||||||| || || ||||||||||||||| |||||| ||||| || || ||||| ||||||||||| || |||||||||| |
|
|
| T |
36664271 |
ccgaattgttgcttaaattcttctagaatggatgtctatcttgatcatgtaccacaaccaacgtcaactaagaatttgatccatttctctcaaagtaagt |
36664370 |
T |
|
| Q |
122 |
ttactaa |
128 |
Q |
| |
|
|||||| |
|
|
| T |
36664371 |
atactaa |
36664377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 429 - 511
Target Start/End: Complemental strand, 36677393 - 36677311
Alignment:
| Q |
429 |
gtggtattgttcaaggatgattatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccatgat |
511 |
Q |
| |
|
||||| ||||| |||||| |||||||||||| ||||| || |||| || ||||||||||||||||||||||||||| ||||| |
|
|
| T |
36677393 |
gtggtgttgttgaaggataattatgcacatgtagatttcattgcggctgtcaatgctaaacaagtcgtttatgatcctatgat |
36677311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 429 - 511
Target Start/End: Complemental strand, 36687475 - 36687393
Alignment:
| Q |
429 |
gtggtattgttcaaggatgattatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccatgat |
511 |
Q |
| |
|
||||| ||||| |||||| |||||||||||| ||||| || |||| || ||||||||||||||||||||||||||| ||||| |
|
|
| T |
36687475 |
gtggtgttgttgaaggataattatgcacatgtagatttcattgcggctgtcaatgctaaacaagtcgtttatgatcctatgat |
36687393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 644 - 684
Target Start/End: Complemental strand, 36711398 - 36711358
Alignment:
| Q |
644 |
tgagtatgttagatttccatcaaaattaaaataaaaagaat |
684 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
36711398 |
tgagtatgttagatttccgtcaaaattaaaacaaaaagaat |
36711358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 36677489 - 36677440
Alignment:
| Q |
233 |
gcaaagtatgattatgttaatgcagcacaaaatatacaacactatggaca |
282 |
Q |
| |
|
|||||||||||||||||| || |||||||||| ||| |||||||||||| |
|
|
| T |
36677489 |
gcaaagtatgattatgttcatcaagcacaaaatctactacactatggaca |
36677440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 36687571 - 36687522
Alignment:
| Q |
233 |
gcaaagtatgattatgttaatgcagcacaaaatatacaacactatggaca |
282 |
Q |
| |
|
|||||||||||||||||| || |||||||||| ||| |||||||||||| |
|
|
| T |
36687571 |
gcaaagtatgattatgttcatcaagcacaaaatctactacactatggaca |
36687522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 144; Significance: 3e-75; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 170 - 539
Target Start/End: Original strand, 30905469 - 30905837
Alignment:
| Q |
170 |
tttttcttactggcatggctcttatactatgaaatttgagtagtgatcagaacaggaaaaatagcaaagtatgattatgttaatgcagcacaaaatatac |
269 |
Q |
| |
|
||||| |||||| ||||||| || || |||| || ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||| |
|
|
| T |
30905469 |
ttttttttactgacatggcttttgtattatggtatatgagtagtgatcagaacaggaaaaatagcaaagtatgattatgttgatcaagcacaaaatgtac |
30905568 |
T |
|
| Q |
270 |
aacactatggacaaagggttcctccaacatatgacatgacaaaaatctcaagtgaattcccactttttcttggctatggagggaaggannnnnnnatctg |
369 |
Q |
| |
|
|||||||||| ||| | ||||||||||| || ||| |||| |||||| | | ||| |||||||||||||| || ||||||||| | || ||||| |
|
|
| T |
30905569 |
aacactatggtcaacgagttcctccaacttacgacctgaccaaaatcccgaatgatttcccactttttctcggatatggagggcaaga-tatgctatctg |
30905667 |
T |
|
| Q |
370 |
atgtacaagatgtgaaggttttgctcaatgatctcagtgatcaagatgctaacaagcgcgtggtattgttcaaggatgattatgcacatgctgattttat |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||| ||||| | |||||| | ||||||||||||||||||||| | |
|
|
| T |
30905668 |
atgtacaagatgtgaaggttttgctcaatgacctccaagatcatgatgctaacaagctcgtggcagcgttcaatcaagattatgcacatgctgattttgt |
30905767 |
T |
|
| Q |
470 |
agcgggtgacaatgctaaacaagtcgtttatgatcccatgatagcttttttcaactctcattgattttac |
539 |
Q |
| |
|
|| | || |||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
30905768 |
tatggccgtcagtgctaaacaagtggtttatgatcccatgatagcttttttcaacgctcattaattttac |
30905837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 30905176 - 30905278
Alignment:
| Q |
25 |
aattgctgcataaattcttctaagatacatttctatcttgatcatgaaccacatccaacatcgacaaagaacttgatccatttttcgcaaagtaagttta |
124 |
Q |
| |
|
||||||||||||||| |||||| |||| || |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| || |
|
|
| T |
30905176 |
aattgctgcataaatgcttctaggatagatatctatcttgatcatgaaccacaaccaacatcaacaaagaacttgatccatttttctcaaagtaagtcta |
30905275 |
T |
|
| Q |
125 |
cta |
127 |
Q |
| |
|
||| |
|
|
| T |
30905276 |
cta |
30905278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 30911588 - 30911694
Alignment:
| Q |
22 |
ccgaattgctgcataaattcttctaagatacatttctatcttgatcatgaaccacatccaacatcgacaaagaacttgatccatttttcgcaaagtaagt |
121 |
Q |
| |
|
|||||||| || ||||| ||||| | |||| ||| ||| || || ||||||||||| |||||||| ||||||||||||||||||| ||| || ||||||| |
|
|
| T |
30911588 |
ccgaattgttgtataaactcttccaggatagattactacctcgaacatgaaccacaaccaacatcaacaaagaacttgatccattattctcagagtaagt |
30911687 |
T |
|
| Q |
122 |
ttactaa |
128 |
Q |
| |
|
|||||| |
|
|
| T |
30911688 |
ctactaa |
30911694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 439 - 524
Target Start/End: Original strand, 30912203 - 30912288
Alignment:
| Q |
439 |
tcaaggatgattatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccatgatagcttttttcaac |
524 |
Q |
| |
|
||||||| |||||||||||||||||||||| | ||| || |||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
30912203 |
tcaaggaaaattatgcacatgctgattttattatgagtgtcaccgctaaacaagacgtttatgatcccatgatagattttttcaac |
30912288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 448 - 534
Target Start/End: Original strand, 11294987 - 11295073
Alignment:
| Q |
448 |
attatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccatgatagcttttttcaactctcattgat |
534 |
Q |
| |
|
||||||| |||||||||||||| |||| ||| |||||||||| |||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
11294987 |
attatgctcatgctgattttattttaggtgtcaaagctaaacaagacgtttatgatcccatgatagattttttcaatgctcattgat |
11295073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 11294508 - 11294578
Alignment:
| Q |
58 |
tatcttgatcatgaaccacatccaacatcgacaaagaacttgatccatttttcgcaaagtaagtttactaa |
128 |
Q |
| |
|
||||| || |||| |||||| ||||| || ||||||||||||||||||||||| ||||||| || |||||| |
|
|
| T |
11294508 |
tatctcgaacatgtaccacaaccaacgtcaacaaagaacttgatccatttttctcaaagtacgtctactaa |
11294578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 248
Target Start/End: Original strand, 11300706 - 11300745
Alignment:
| Q |
209 |
gtagtgatcagaacaggaaaaatagcaaagtatgattatg |
248 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
11300706 |
gtagtgatcagaaaaggaacaatagcaaagtatgattatg |
11300745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 127
Target Start/End: Original strand, 11300385 - 11300455
Alignment:
| Q |
57 |
ctatcttgatcatgaaccacatccaacatcgacaaagaacttgatccatttttcgcaaagtaagtttacta |
127 |
Q |
| |
|
|||||| || ||||||||||| ||||||| |||||||| |||||||||||||| || |||| || ||||| |
|
|
| T |
11300385 |
ctatctcgaacatgaaccacaagcaacatcaacaaagaatttgatccatttttctcagagtacgtctacta |
11300455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University