View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9353_low_12 (Length: 243)

Name: NF9353_low_12
Description: NF9353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9353_low_12
NF9353_low_12
[»] chr4 (5 HSPs)
chr4 (15-238)||(47041728-47041951)
chr4 (72-150)||(15460314-15460392)
chr4 (72-150)||(15820957-15821035)
chr4 (72-150)||(18112450-18112528)
chr4 (72-150)||(18161979-18162057)
[»] chr7 (1 HSPs)
chr7 (72-150)||(18405905-18405983)
[»] chr5 (2 HSPs)
chr5 (72-150)||(31095633-31095711)
chr5 (72-150)||(20939844-20939922)
[»] scaffold0264 (1 HSPs)
scaffold0264 (72-150)||(5082-5160)
[»] scaffold0001 (1 HSPs)
scaffold0001 (72-150)||(131631-131709)
[»] chr8 (2 HSPs)
chr8 (72-150)||(27008924-27009002)
chr8 (72-149)||(21913381-21913458)
[»] chr6 (2 HSPs)
chr6 (72-150)||(27519892-27519970)
chr6 (78-150)||(14994376-14994448)
[»] chr1 (1 HSPs)
chr1 (72-150)||(28136130-28136208)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 47041951 - 47041728
Alignment:
Q  15 ggcattgtgtacattcttttgcacctggaattgagcaaaaagttatcagcccagtcgaagcagtctttatgatctatctctatagatcctgattcataat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47041951 ggcattgtgtacattcttttgcacctggaattgagcaaaaagttatcagcccagtcgaagcaatctttatgatctatctctatagatcctgattcataat 47041852  T
Q  115 atgtaggtagcttcgcctaaatctttcatggaaaaggcttggatagagttttgcatagatgcattgaaactaactttgttcttaattatgactttttgat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47041851 atgtaggtagcttcgcctaaatctttcatggaaaaggcttggatagagttttgcatagatgcattgaaactaactttgttcttaattatgactttttgat 47041752  T
Q  215 aatgctaacaacacaggttctgct 238  Q
    ||||||||||||||| | ||||||    
T  47041751 aatgctaacaacacaagctctgct 47041728  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 15460392 - 15460314
Alignment:
Q  72 aagcagtctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 150  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||| ||||  ||||| ||||| |||||||| ||||||    
T  15460392 aagcaatctttgtgatctatctctatagatcctgattcctaatatataggaggcttcacctaagtctttcatagaaaag 15460314  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 15821035 - 15820957
Alignment:
Q  72 aagcagtctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 150  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||| ||||  ||||| ||||| |||||||| ||||||    
T  15821035 aagcaatctttgtgatctatctctatagatcctgattcctaatatataggaggcttcacctaagtctttcatagaaaag 15820957  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 18112450 - 18112528
Alignment:
Q  72 aagcagtctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 150  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||| ||||  ||||| ||||| |||||||| ||||||    
T  18112450 aagcaatctttgtgatctatctctatagatcctgattcctaatatataggaggcttcacctaagtctttcatagaaaag 18112528  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 18162057 - 18161979
Alignment:
Q  72 aagcagtctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 150  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||| ||||  ||||| ||||| |||||| | ||||||    
T  18162057 aagcaatctttgtgatctatctctatagatcctgattcctaatatataggcggcttcacctaagtctttcgtagaaaag 18161979  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 18405983 - 18405905
Alignment:
Q  72 aagcagtctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 150  Q
    ||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||| ||||| |||||||| ||||||    
T  18405983 aagcaatctttgtgatctatctctatagatcctgattcctaatatgtaggaagcttcacctaagtctttcatagaaaag 18405905  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 31095711 - 31095633
Alignment:
Q  72 aagcagtctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 150  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||| ||||  ||||| |||||||||||||| ||||||    
T  31095711 aagcaatctttgtgatctatctctatagatcctgattcctaatatataggaggcttcacctaaatctttcatagaaaag 31095633  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 20939922 - 20939844
Alignment:
Q  72 aagcagtctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 150  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||| ||||  ||||| ||||| |||||||| ||||||    
T  20939922 aagcaatctttgtgatctatctctatagatcctgattcctaatatataggaggcttcacctaagtctttcatagaaaag 20939844  T

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Target: scaffold0264 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 5082 - 5160
Alignment:
Q  72 aagcagtctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 150  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||| ||||  ||||| ||||| |||||||| ||||||    
T  5082 aagcaatctttgtgatctatctctatagatcctgattcctaatatataggaggcttcacctaagtctttcatagaaaag 5160  T

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Target: scaffold0001 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 131631 - 131709
Alignment:
Q  72 aagcagtctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 150  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||| ||||  ||||| ||||| |||||||| ||||||    
T  131631 aagcaatctttgtgatctatctctatagatcctgattcctaatatataggaggcttcacctaagtctttcatagaaaag 131709  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 27008924 - 27009002
Alignment:
Q  72 aagcagtctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 150  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||| ||||  ||||| ||||| |||||||| ||||||    
T  27008924 aagcaatctttgtgatctatctctatagatcctgattcctaatatataggaggcttcacctaagtctttcatagaaaag 27009002  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 21913458 - 21913381
Alignment:
Q  72 aagcagtctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaa 149  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||| ||||  ||||| ||||| |||||||| |||||    
T  21913458 aagcaatctttgtgatctatctctatagatcctgattcctaatatataggaggcttcacctaagtctttcatagaaaa 21913381  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 27519892 - 27519970
Alignment:
Q  72 aagcagtctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 150  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||| ||||  ||||| ||||| |||||||| ||||||    
T  27519892 aagcaatctttgtgatctatctctatagatcctgattcctaatatataggaggcttcacctaagtctttcatagaaaag 27519970  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 14994448 - 14994376
Alignment:
Q  78 tctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 150  Q
    ||||| ||||||||||||||||||  |||||| |||||| ||||  ||||| ||||| ||||| || ||||||    
T  14994448 tctttgtgatctatctctatagattttgattcctaatatataggaggcttcacctaagtcttttatagaaaag 14994376  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 28136130 - 28136208
Alignment:
Q  72 aagcagtctttatgatctatctctatagatcctgattcataatatgtaggtagcttcgcctaaatctttcatggaaaag 150  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||| ||||  ||||| ||||| |||||||| ||||||    
T  28136130 aagcaatctttgtgatctatctctatagatcctgattcctaatatataggaggcttcacctaagtctttcatagaaaag 28136208  T

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