View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9353_low_13 (Length: 240)
Name: NF9353_low_13
Description: NF9353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9353_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 36524787 - 36524573
Alignment:
| Q |
1 |
cttgttgattcaccttacatgtggtggcctgaaaaccttgtgcaagtgtctctatttagggcatttcatgnnnnnnnnnnnnggcctaaaggcggaactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| |
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| T |
36524787 |
cttgttgattcaccttacatgtggtggcctgaaaaccttgtgcaagtctctctatttagggcatttcatgaaaaagaaaaaaggcctaaaggaggaactt |
36524688 |
T |
|
| Q |
101 |
ctaggctgcaattctttttcgtagtctttgtagctagctttgcgtattacatcattcccggctactttttccatgcaatatcaaccatctcctttgtttg |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||| |||||||||||||| ||||||||| || |||| |||||||| |
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| T |
36524687 |
ctaggctgcaattcttttccgtagtctttgtagctagcttcacgtattacatcgttcctggctactttttccaagcaatatcagccgtctcttttgtttg |
36524588 |
T |
|
| Q |
201 |
cttgatttggaaaga |
215 |
Q |
| |
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|||||||||||||| |
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| T |
36524587 |
tttgatttggaaaga |
36524573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 36537232 - 36537010
Alignment:
| Q |
1 |
cttgttgattcaccttacatgtggtggcctgaaaaccttgtgcaagtgtctctatttagggcatttcatgnnnnnnnnnnnnggcctaaaggcggaactt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||| ||||||| |
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| T |
36537232 |
cttgttgattcaccttacatgtggtggcctgaaatccttgtgcaagtgtctttatttagggcatttcatgaaaaagaaaaaaggcctaaaggaggaactt |
36537133 |
T |
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| Q |
101 |
ctaggctgcaattctttttcgtagtctttgtagctagctttgcgtattacatcattcccggctactttttccatgcaatatcaaccatctcctttgtttg |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||| ||||| || ||||||||||| | || ||| |||| |
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| T |
36537132 |
ctaggctgcaattctttttcttagtctttgtagctagctttgcgtattacatagttccgggctatttttttcaagcaatatcaactgtttcttttttttg |
36537033 |
T |
|
| Q |
201 |
cttgatttggaaagattcgatca |
223 |
Q |
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||||||||||||||||| |||| |
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| T |
36537032 |
tttgatttggaaagattcaatca |
36537010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 36531620 - 36531406
Alignment:
| Q |
1 |
cttgttgattcaccttacatgtggtggcctgaaaaccttgtgcaagtgtctctatttagggcatttcatgnnnnnnnnnnnnggcctaaaggcggaactt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| |||||||||| ||||| ||| ||||| | |
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| T |
36531620 |
cttgttgattcaccttacatgtggtggcctgaaagccttgtgcaggtttctctatttagagcatttcatgaaaaagaaaaaaggcctcgaggaggaacat |
36531521 |
T |
|
| Q |
101 |
ctaggctgcaattctttttcgtagtctttgtagctagctttgcgtattacatcattcccggctactttttccatgcaatatcaaccatctcctttgtttg |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| |||| ||||| || |
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| T |
36531520 |
ccaggctgcaattctttttcgtagtctttgtagctagctttgcgtattacatcattccaggatactttttccaagcaatatcaaccgtctcttttgtatg |
36531421 |
T |
|
| Q |
201 |
cttgatttggaaaga |
215 |
Q |
| |
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|||||||||||||| |
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| T |
36531420 |
tttgatttggaaaga |
36531406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 213
Target Start/End: Original strand, 42058394 - 42058520
Alignment:
| Q |
87 |
taaaggcggaacttctaggctgcaattctttttcgtagtctttgtagctagctttgcgtattacatcattcccggctactttttccatgcaatatcaacc |
186 |
Q |
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|||||| ||||| ||||||| |||||||||||| || ||||||| |||||||||| |||||||| ||||| |||||||||||||| |||||||||| |
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| T |
42058394 |
taaaggaggaaccactaggctacaattctttttcctaatctttgtggctagctttggttattacattattccaggctactttttccaaagaatatcaacc |
42058493 |
T |
|
| Q |
187 |
atctcctttgtttgcttgatttggaaa |
213 |
Q |
| |
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|| || ||||||||||||| |||||| |
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| T |
42058494 |
atatctgttgtttgcttgatatggaaa |
42058520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 213
Target Start/End: Original strand, 42073761 - 42073891
Alignment:
| Q |
83 |
ggcctaaaggcggaacttctaggctgcaattctttttcgtagtctttgtagctagctttgcgtattacatcattcccggctactttttccatgcaatatc |
182 |
Q |
| |
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|||||||||| |||| |||||||||||||||||||| | || ||||| ||||||||||| |||||||| ||||| |||||||||||||| ||||||| |
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| T |
42073761 |
ggcctaaaggaggaaacactaggctgcaattctttttcctggtttttgtggctagctttgcttattacattattccaggctactttttccaatcaatatc |
42073860 |
T |
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| Q |
183 |
aaccatctcctttgtttgcttgatttggaaa |
213 |
Q |
| |
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| |||| || |||| |||||||| |||||| |
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| T |
42073861 |
agccatatctgttgtctgcttgatatggaaa |
42073891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 42082285 - 42082375
Alignment:
| Q |
83 |
ggcctaaaggcggaacttctaggctgcaattctttttcgtagtctttgtagctagctttgcgtattacatcattcccggctactttttcca |
173 |
Q |
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|||||||||| |||| |||||||||||||||||||| | | ||||| ||||||||||| |||||||| ||||| || ||||||||||| |
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| T |
42082285 |
ggcctaaaggaggaaacactaggctgcaattctttttcatgatttttgtggctagctttgcttattacattattccaggttactttttcca |
42082375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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