View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9353_low_4 (Length: 634)
Name: NF9353_low_4
Description: NF9353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9353_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 585; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 18 - 622
Target Start/End: Complemental strand, 36591278 - 36590674
Alignment:
| Q |
18 |
agtattgagcctcaccttcttaagagaattgtgaattatgctttttctcataatgtgcaaagattgggaatttctgttaaaggggatatttgtcatattc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36591278 |
agtattgagcctcaccttcttaagagaattgtgaattatgctttttctcataatgtgcaaagattgggaatttctgttaaaggggatatttgtcatattc |
36591179 |
T |
|
| Q |
118 |
tgccttgtgtttcttcgtgtaagactttaacgtctcttaagctttctgtttcgccgaaagggaggcataattatgggagaacgttgtttccgaaatcatt |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36591178 |
tgccttgtgtttcttcgtgtcggactttaacgtctcttaagctttctgtttcgcccaaagggaggcataattatgggagaacgttgtttccaaaatcatt |
36591079 |
T |
|
| Q |
218 |
ggatttgccagcgttaaccagtttgcatctagggaatttcgtcttttgtgctagtgataaaggccgaactgagcccttttcgggttttaacaagttgaat |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36591078 |
ggatttgccagcgttaaccagtttgcatctagggaatttcgtcttttgtgctagtgataaaggccgaactgagcccttttcgggttttaacaagttgaat |
36590979 |
T |
|
| Q |
318 |
agtttggtcattgacaattgtacggtgaaggatgcgcagattctttgcatattaagtgagacacttgtcaatttgactatgcgtaatcattcttctgacg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36590978 |
agtttggtcattgacaattgtacggtgaaggatgcgcagattctttgcatattaagtgagacacttgtcaatttgactatgcgtaatcattcttctgacg |
36590879 |
T |
|
| Q |
418 |
tttacaaaatcgaactctccgctccaagtcttagcacgtttgcgtttaccggaaccccttatcagaaactttgtgggagcaatctttcctcggttaaaca |
517 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36590878 |
tttacaaaatcgaactatccgctccaagtcttagcacgtttgcgtttaccggaaccccttatcagaaactttgtgggagcaatctttcctcggttaaaca |
36590779 |
T |
|
| Q |
518 |
ggtgaatattgatgcagaaatgttgtctaactacactgagcctcctttggttttgcttagctggctgttagaacttgctaatatcaaatcattgacggtc |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36590778 |
ggtgaatattgatgcagaaatgttgtctaactacactgagcctcctttggttttgcttagctggctgttagaacttgctaatatcaaatcattgacggtc |
36590679 |
T |
|
| Q |
618 |
tctgc |
622 |
Q |
| |
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||||| |
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| T |
36590678 |
tctgc |
36590674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 96 - 622
Target Start/End: Complemental strand, 15527069 - 15526543
Alignment:
| Q |
96 |
aaaggggatatttgtcatattctgccttgtgtttcttcgtgtaagactttaacgtctcttaagctttctgtttcgccgaaagggaggcataattatggga |
195 |
Q |
| |
|
||||| ||||| |||||||| || ||||| ||||||||| | |||| ||||| || |||| ||| || |||||||| ||||| | |||||||| ||| |
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|
| T |
15527069 |
aaaggcgatatatgtcatatcctaccttgcatttcttcgtctcagacgttaacatcacttaggctatccgtttcgcctaaaggtcgttataattattgga |
15526970 |
T |
|
| Q |
196 |
gaacgttgtttccgaaatcattggatttgccagcgttaaccagtttgcatctagggaatttcgtcttttgtgctagtgataaaggccgaactgagccctt |
295 |
Q |
| |
|
||||||||||||| || ||| | ||||| |||| ||||||| || | |||||||| ||||| |||||||| || | |||| || |||| ||| ||||| |
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| T |
15526969 |
gaacgttgtttcctaactcactagatttaccagtgttaacctgtctacatctaggaaattttgtcttttgcgccactgatggtggtcgaattgatccctt |
15526870 |
T |
|
| Q |
296 |
ttcgggttttaacaagttgaatagtttggtcattgacaattgtacggtgaaggatgcgcagattctttgcatattaagtgagacacttgtcaatttgact |
395 |
Q |
| |
|
||| | ||||| | |||| | |||| ||||||| |||||| ||||||||| ||| | || | ||||| ||||| ||||||| || | || || |
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| T |
15526869 |
ttcagcctttaatagattgagtgatttgatcattgataattgttcggtgaagggtgcaaatatcttgtgcatgttaagccagacactagttagcttaacg |
15526770 |
T |
|
| Q |
396 |
atgcgtaatcattcttctgacgtttacaaaatcgaactctccgctccaagtcttagcacgtttgcgtttaccggaaccccttatcagaaactttgtggga |
495 |
Q |
| |
|
|| ||||||||||| | || |||| ||||||| || || |||||||| ||| | || ||||| ||||| || || |||||||||| |||| ||| | |
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| T |
15526769 |
atacgtaatcattcattccacaattaccaaatcgagctatctgctccaagccttcgtacatttgcttttacgggtactccttatcagacacttcttggaa |
15526670 |
T |
|
| Q |
496 |
gcaatctttcctcggttaaacaggtgaatattgatgcagaaatgttgtctaactacactgagcctcctttggttttgcttagctggctgt-tagaacttg |
594 |
Q |
| |
|
||||||||| || || ||| | || | |||||| || ||||||||| | || ||| | | |||||||||||||| || |||||||| ||| |||| |
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| T |
15526669 |
ccaatctttcttctgtcaaaaaagtaattattgacgcggaaatgttggcaaattactcggtacctcctttggttttactctcctggctgtctag-tcttg |
15526571 |
T |
|
| Q |
595 |
ctaatatcaaatcattgacggtctctgc |
622 |
Q |
| |
|
||||||| ||||||||||||||||||| |
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|
| T |
15526570 |
ctaatatagaatcattgacggtctctgc |
15526543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 391
Target Start/End: Original strand, 18364690 - 18364795
Alignment:
| Q |
286 |
ctgagcccttttcgggttttaacaagttgaatagtttggtcattgacaattgtacggtgaaggatgcgcagattctttgcatattaagtgagacacttgt |
385 |
Q |
| |
|
||||||||||||| | ||| |||||||||||||||||| ||| ||||| ||| || ||||| || ||||| |||||| ||||||||||||||| |
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|
| T |
18364690 |
ctgagcccttttccgcctttcccaagttgaatagtttggttatttctggttgtaaggtaaaagatgctcaaattctcagcatatcaagtgagacacttgt |
18364789 |
T |
|
| Q |
386 |
caattt |
391 |
Q |
| |
|
|||||| |
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|
| T |
18364790 |
caattt |
18364795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 391
Target Start/End: Complemental strand, 36598235 - 36598130
Alignment:
| Q |
286 |
ctgagcccttttcgggttttaacaagttgaatagtttggtcattgacaattgtacggtgaaggatgcgcagattctttgcatattaagtgagacacttgt |
385 |
Q |
| |
|
||||||||||||| | ||| |||||||||||||||||| ||| ||||| ||| || ||||| || ||||| |||||| ||||||||||||||| |
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|
| T |
36598235 |
ctgagcccttttccgcctttcccaagttgaatagtttggttatttctggttgtaaggtaaaagatgctcaaattctcagcatatcaagtgagacacttgt |
36598136 |
T |
|
| Q |
386 |
caattt |
391 |
Q |
| |
|
|||||| |
|
|
| T |
36598135 |
caattt |
36598130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 311 - 404
Target Start/End: Complemental strand, 42602457 - 42602364
Alignment:
| Q |
311 |
gttgaatagtttggtcattgacaattgtacggtgaaggatgcgcagattctttgcatattaagtgagacacttgtcaatttgactatgcgtaat |
404 |
Q |
| |
|
||||||||||||||||||| || ||||||||| || ||||| || || || | |||| ||||||||||||||||||||| |||||| |||| |
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|
| T |
42602457 |
gttgaatagtttggtcattagcagttgtacggtaaaagatgcacaaatcctcaggatatcaagtgagacacttgtcaatttagctatgcataat |
42602364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 398
Target Start/End: Complemental strand, 45906481 - 45906386
Alignment:
| Q |
303 |
tttaacaagttgaatagtttggtcattgacaattgtacggtgaaggatgcgcagattctttgcatattaagtgagacacttgtcaatttgactatg |
398 |
Q |
| |
|
|||||||||||| ||||||| |||||| |||||||| |||| |||||| | | |||||||||| ||||| |||||||||||||| |||||| |
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|
| T |
45906481 |
tttaacaagttgtatagttttgtcatttgcaattgtattgtgagggatgcaaaaaccctttgcatatcaagtggaacacttgtcaatttaactatg |
45906386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 45856558 - 45856501
Alignment:
| Q |
220 |
atttgccagcgttaaccagtttgcatctagggaatttcgtcttttgtgctagtgataa |
277 |
Q |
| |
|
|||||||||| ||||| | ||||||||||||||||||| ||||||| | |||||||| |
|
|
| T |
45856558 |
atttgccagcattaactatcttgcatctagggaatttcgccttttgtcccagtgataa |
45856501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 620
Target Start/End: Original strand, 5369224 - 5369268
Alignment:
| Q |
576 |
agctggctgttagaacttgctaatatcaaatcattgacggtctct |
620 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||| |||||| |
|
|
| T |
5369224 |
agctggctgcaagagcttgctaatatcaaatcattgacagtctct |
5369268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 620
Target Start/End: Original strand, 5374960 - 5375004
Alignment:
| Q |
576 |
agctggctgttagaacttgctaatatcaaatcattgacggtctct |
620 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||| || |||||| |
|
|
| T |
5374960 |
agctggctgctagagcttgctaatatcaaatcattaacagtctct |
5375004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 391
Target Start/End: Complemental strand, 44501042 - 44500954
Alignment:
| Q |
303 |
tttaacaagttgaatagtttggtcattgacaattgtacggtgaaggatgcgcagattctttgcatattaagtgagacacttgtcaattt |
391 |
Q |
| |
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||||||| ||||||||||||||| || || ||||||| ||||||| ||| || | ||| | ||||| || ||| |||||||||||||| |
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| T |
44501042 |
tttaacagattgaatagtttggtccttcacgattgtaccgtgaagggtgcacaaactctctccatatcaaatgaaacacttgtcaattt |
44500954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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