View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9353_low_5 (Length: 446)
Name: NF9353_low_5
Description: NF9353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9353_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 16 - 428
Target Start/End: Complemental strand, 1327375 - 1326963
Alignment:
| Q |
16 |
acatcaattacatatatgcaatcacaatttgacttcaattaaatgctgagcacacacgcctaatgtttccaacagaacctgtctttactccaatttgtcc |
115 |
Q |
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| T |
1327375 |
acatcaattacatatatgtaatcacaatttgacttcaattaaatgctgagcacacacgcctaatgtttccaacagaacctgtctttactccaatttgtcc |
1327276 |
T |
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| Q |
116 |
catttttaccatggactgaacaaaatcattttcaaaagaaggtccaaatgttggatttataggattaaagtaggaatcaatgacactctttgttacaaag |
215 |
Q |
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| T |
1327275 |
catttttaccatggactgaacaaaatcattttcaaaagaaggtccaaatgttggatttataggattgaagtaggaatcaatgacactctttgttacaaag |
1327176 |
T |
|
| Q |
216 |
tcatcattaagtcttgcatcagaagctaacacagcaaaaccttcccttatgtttttcaatatactcttgtcaaatttcagatcactcccttcatccatgg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1327175 |
tcatcattaagtcttgcatcagaagctaacacagcaaaaccttcccttatgtttttcaatatactcttgtcaaatttcagatcactcccttcatccatgg |
1327076 |
T |
|
| Q |
316 |
ctaaacggatgttgatatctccatccttagggcaccttgctttcagttctgggagaaaattcagattaatagttgggtctgatccaaatgggaaaaattc |
415 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1327075 |
ctaaacggatgttgacatctccatccttagggcaccttgctttcagttctgggagaaaattcaggttaatagttgggtctgatccaaatgggaaaaattc |
1326976 |
T |
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| Q |
416 |
gtatagtcttttt |
428 |
Q |
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| T |
1326975 |
gtatagtcttttt |
1326963 |
T |
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