View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9353_low_9 (Length: 250)
Name: NF9353_low_9
Description: NF9353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9353_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 36537487 - 36537727
Alignment:
| Q |
1 |
ttgcagccataagtttcccaagtgggagggtaataatctgagccgagacagaagtgattttcaaagggttggttttgtatcctaaaaattggttcataaa |
100 |
Q |
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| T |
36537487 |
ttgcagccataagtttcccaagtgggagggtaataatctgagctgagacagaagtgattttcaaagggttggttttgtatcctaaaaattggttcataaa |
36537586 |
T |
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| Q |
101 |
tgcaaggagcacacatgatgctaaccctagaacccatgtccggaaagtaagtgctggctgtgaagggtcatcagtgattggaactgttagcctcacttgc |
200 |
Q |
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| T |
36537587 |
tgcaaggagcacacatgatgctaaccctagaacccatgtccggaaagtaagtgctggctgtgaagggtcatcagtgattggaactgttagcctcacttgc |
36537686 |
T |
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| Q |
201 |
tcaataggagaatcatcaatgctatattcatctgtctctgc |
241 |
Q |
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| T |
36537687 |
tcaataggagaatcatcaatgctatattcatctgtctctgc |
36537727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 36531875 - 36532115
Alignment:
| Q |
1 |
ttgcagccataagtttcccaagtgggagggtaataatctgagccgagacagaagtgattttcaaagggttggttttgtatcctaaaaattggttcataaa |
100 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||| |
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| T |
36531875 |
ttgcagccataagtttcccaagtggcagggcaataatctgagccgagacagaagtgattttcaaagggttggttctgtagcctaaaaactggttcacaaa |
36531974 |
T |
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| Q |
101 |
tgcaaggagcacacatgatgctaaccctagaacccatgtccggaaagtaagtgctggctgtgaagggtcatcagtgattggaactgttagcctcacttgc |
200 |
Q |
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| T |
36531975 |
tgcaaggagaatacatgatgctaaccctagaacccatgtccggaatgttagcgctggctgagaagggtcatcggtgatcggaactgttagcctcacttgc |
36532074 |
T |
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| Q |
201 |
tcaataggagaatcatcaatgctatattcatctgtctctgc |
241 |
Q |
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| T |
36532075 |
tcaataggactatcattaatgctatattcatcaatctctgc |
36532115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 36525042 - 36525282
Alignment:
| Q |
1 |
ttgcagccataagtttcccaagtgggagggtaataatctgagccgagacagaagtgattttcaaagggttggttttgtatcctaaaaattggttcataaa |
100 |
Q |
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||||||||||||| | ||||||||||| || || |||||||| || |||||||||||| |||||||||||||| |||| ||||| || ||||||| ||| |
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| T |
36525042 |
ttgcagccataagccttccaagtgggagtgtgatgatctgagctgaaacagaagtgattctcaaagggttggttctgtagcctaagaactggttcacaaa |
36525141 |
T |
|
| Q |
101 |
tgcaaggagcacacatgatgctaaccctagaacccatgtccggaaagtaagtgctggctgtgaagggtcatcagtgattggaactgttagcctcacttgc |
200 |
Q |
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| T |
36525142 |
tgcaaggagcacacatgaagctaagcctagaatccatgtcctgaatgttagtgctggctgagaagggtcatcagtgattggaactgttaacctcacttgc |
36525241 |
T |
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| Q |
201 |
tcaataggagaatcatcaatgctatattcatctgtctctgc |
241 |
Q |
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| T |
36525242 |
tcaatgggactatcattaatgttgtattcatctttctctgc |
36525282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 42072158 - 42071942
Alignment:
| Q |
1 |
ttgcagccataagtttcccaagtgggagggtaataatctgagccgagacagaagtgattttcaaagggttggttttgtatcctaaaaattggttcataaa |
100 |
Q |
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|||||||||| ||||| |||| |||||| | ||||||||| || ||||||||||| || || |||||||||| || |||| || |||||||||| ||| |
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| T |
42072158 |
ttgcagccattagttttccaactgggagagcaataatctgtgctgagacagaagtaatagacagagggttggttctgaatccaaagaattggttcacaaa |
42072059 |
T |
|
| Q |
101 |
tgcaaggagcacacatgatgctaaccctagaacccatgtccggaaagtaagtgctggctgtgaagggtcatcagtgattggaactgttagcctcacttgc |
200 |
Q |
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|||||| | || || | || || | ||||||||||| || || |||||||| |||| |||||| || || |||| |||||||| || |||||| |
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| T |
42072058 |
ggcaagggcaatgcaagacacaaaaccaataacccatgtcctaaatgttagtgctggttgtgtagggtcgtctgttattgacactgttagtctgacttgc |
42071959 |
T |
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| Q |
201 |
tcaataggagaatcatc |
217 |
Q |
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|| |||||||||||||| |
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| T |
42071958 |
tctataggagaatcatc |
42071942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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