View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9354_2 (Length: 475)
Name: NF9354_2
Description: NF9354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9354_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 31 - 475
Target Start/End: Original strand, 42393259 - 42393703
Alignment:
| Q |
31 |
ctttttagcagagatatcatggactgtcgtatctggaatgtgtcaagtgatggaaaattttctgtcaagtcttcatacagcttacgtatgaagctaattg |
130 |
Q |
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| T |
42393259 |
ctttttagcagagatatcatggactgtcgtatctggaatgtgtcaagtgatggaaaatattctgtcaagtcttcatacagcttacgtatgaggctaattg |
42393358 |
T |
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| Q |
131 |
ctaattgttgaacctgctcatgaattcattcaacgcaattggagtgtaatttggaaactgcatattcctacatgcgtccgccccttcctatggtgatccc |
230 |
Q |
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| T |
42393359 |
ctaattgttgaacctgctcgtgaattcattcaacgcaattggagtgtaatttggaaactgcatattcctacatgcgtccgccccttcctatggtgatccc |
42393458 |
T |
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| Q |
231 |
tccatgattgcttgcctgcccgcggaaatctaatcaataaacgggttcagtgtgaagatatttgcattctatgtgattctgaacctgaagactgcaagca |
330 |
Q |
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| T |
42393459 |
tccatgattgcttgcctacccgcggaaatctaatcaataaacgggttcagtgtgaagatatttgtattctatgtgattctgaacctgaagactgcaagca |
42393558 |
T |
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| Q |
331 |
tgtttttcttatctgcccgatagcaaagcaatgttggggaaatcttcgcatattatagcaagcaatactggaacatcccagtcctctgctgatgttttct |
430 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393559 |
tgtttttcttatctgcccgatagcaaagcaatgttggggaaatcttcgcatattatagcaagcaatactggaacatcccagtcctctgctgatgttttct |
42393658 |
T |
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| Q |
431 |
tcaaaatcttgaaaaagatgctcgatgagggcagacgtctcttta |
475 |
Q |
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| T |
42393659 |
tcaaaatcttgaaaaagatgctcgatgaggacagacgtctcttta |
42393703 |
T |
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