View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9354_3 (Length: 420)
Name: NF9354_3
Description: NF9354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9354_3 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 32762194 - 32761797
Alignment:
| Q |
1 |
aaaagaacaattgtttctcgttgttcattttgaattggtggaaatgtaaatgttgttcactcttcatttctgtgaagaagaaaaaagttaaaatagaaaa |
100 |
Q |
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| T |
32762194 |
aaaagaacaattgtttctcgttgttcattttgaattggtggaaatgtaaatgttgttctctcttcatttctgtgaagaagaaaaaaattaaaatagaaaa |
32762095 |
T |
|
| Q |
101 |
tggtgatcattttgatttaaacctgtttgattggtatggtggtttatttttcaggatacttttgtaaaaaataagatatttatgaaatttgtgtttgttg |
200 |
Q |
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| T |
32762094 |
tgttgatcattttgatttaaacctgtttgattggtatagtggtttatttttcaggatacttttgtaaaaaataagatatttatgaaatttgtgtttgttg |
32761995 |
T |
|
| Q |
201 |
agcactctaataatatactagtttgataacttactatcaaaatatcttctatttgtatgaagtcattggtgaaatccctatttgtttattggtgtttgtg |
300 |
Q |
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| T |
32761994 |
agcactctaataatatactagtttgatcacttactatcgaaatatcttctatttttatgaagtcattggtgaaatccctatttgtttattggtgtttgtg |
32761895 |
T |
|
| Q |
301 |
ggaagaacaaatattttcttcggtccacatagtcgcactagtaagagtaagattaaaagacataattgtgctctttaatttacagtttcaaatattatat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32761894 |
ggaagaacaaatattttcttcggtccacatagtcgcactagt------aagattaaaagacataattgtgctctttaatttacagtttcaaatattatat |
32761801 |
T |
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