View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9354_6 (Length: 314)
Name: NF9354_6
Description: NF9354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9354_6 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 40843927 - 40843810
Alignment:
| Q |
29 |
gatacttcttttgacattctatccaattgcccatgaaatctctcaagagatttacatgtgtatgtaaattttgggctaatttatttgaaaaacctcaatt |
128 |
Q |
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| T |
40843927 |
gatacttcttttgacattctatccaattgcccatgaaatctctcaagagatttacatgtttatgtaaattttgggctaatttatttgaaaaacctcaatt |
40843828 |
T |
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| Q |
129 |
tatgagcatgttcaggag |
146 |
Q |
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| T |
40843827 |
tatgagcatgtttaggag |
40843810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 44 - 301
Target Start/End: Original strand, 46501986 - 46502226
Alignment:
| Q |
44 |
attctatccaa-ttgcccatgaaatctctcaagagatttacatgtgtatgtaaattttgggctaatttatttgaaaaacctcaatttatgagcatgttca |
142 |
Q |
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| T |
46501986 |
attctatccaaattgcctgtgaaatctctcaagcgatttacatgtgtgtgtaaattttgggctaatttttttgaaaaacctcaattcatgagcatgtac- |
46502084 |
T |
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| Q |
143 |
ggagcggtttattactacctaaatatgatgattatcataattcatgtctcctcctaaagcagactcctgctttttatgaggaccatgatgataatgataa |
242 |
Q |
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| T |
46502085 |
--------------ctgtctaaatatgatgatcatcataattcaagactcctccttaagcagactccttctttct---tcgactatgatgatcatgatta |
46502167 |
T |
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| Q |
243 |
tatatttttgctttctggtgagacgtttgagaattgcgtcaagttagattggccacctc |
301 |
Q |
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| T |
46502168 |
tttatttttgcttcttggtgagacgtttgagaatagtgtcaagttagattggccacctc |
46502226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 4042256 - 4042154
Alignment:
| Q |
34 |
ttcttttgacattctatccaa-ttgcccatgaaatctctcaagagatttacatgtgtatgtaaattttgggctaatttatttgaaaaacctcaatttatg |
132 |
Q |
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||||||||| ||| ||||||| ||||| |||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
4042256 |
ttcttttgatattgtatccaaattgcctttgaaatctttgaagcgatttacatgtgtatgtaaattttgggctaatttatttgaaaatcctcaattcatg |
4042157 |
T |
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| Q |
133 |
agc |
135 |
Q |
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||| |
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| T |
4042156 |
agc |
4042154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 301
Target Start/End: Complemental strand, 4042052 - 4041988
Alignment:
| Q |
237 |
tgataatatatttttgctttctggtgagacgtttgagaattgcgtcaagttagattggccacctc |
301 |
Q |
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|||||| || ||||||||||||||||| || ||||||||| |||||||||||||||||||||||| |
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| T |
4042052 |
tgataaaatgtttttgctttctggtgatacatttgagaatagcgtcaagttagattggccacctc |
4041988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 301
Target Start/End: Complemental strand, 48742704 - 48742653
Alignment:
| Q |
250 |
ttgctttctggtgagacgtttgagaattgcgtcaagttagattggccacctc |
301 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
48742704 |
ttgctttctggtgagacgtttgagaataaggtcaaattagattggccacctc |
48742653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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