View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9354_7 (Length: 311)
Name: NF9354_7
Description: NF9354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9354_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 28 - 311
Target Start/End: Original strand, 15427578 - 15427861
Alignment:
| Q |
28 |
gattcaaggagtattgatgttagatgtcagatagcttcatatcttacagtgaaatgttttgttagtggtgggaccattgttgacttgacac--aactttt |
125 |
Q |
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| T |
15427578 |
gattcaaggagtattgatgttagatgtcagatagcttcatatcttacagtgaagtgttttgttagtggtgggaccattgttgacttgacgctaaactttt |
15427677 |
T |
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| Q |
126 |
tcaaccataccccaatctttatttgttaatcttcttggtttatactaccataccacaatacatttctaaccatcttagttggaatcgagcataacaaaaa |
225 |
Q |
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| T |
15427678 |
tcaaccatacaccaatctttatt-gttaatcttcttggtttatactaccatac-acaatacatttctaaccatcttagttggaatcgagcataacaaaaa |
15427775 |
T |
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| Q |
226 |
gaaaacataaggcaaggcctataattcaagtggaggaatctaacttttccatagataagaaaacccttaatgtgtggattccatct |
311 |
Q |
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| T |
15427776 |
gaaaacataaggcaaggcctataattcaagtggaggaatctaacttttccatagaaaagaaaacccttaatgtgtggattccatct |
15427861 |
T |
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