View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9354_high_1 (Length: 379)

Name: NF9354_high_1
Description: NF9354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9354_high_1
NF9354_high_1
[»] chr7 (22 HSPs)
chr7 (1-364)||(20140799-20141162)
chr7 (1-364)||(20133298-20133661)
chr7 (99-362)||(20374486-20374749)
chr7 (3-364)||(20351823-20352184)
chr7 (3-322)||(20338652-20338971)
chr7 (108-312)||(20361235-20361439)
chr7 (60-306)||(20126223-20126473)
chr7 (99-312)||(20360954-20361167)
chr7 (119-360)||(22080712-22080953)
chr7 (99-309)||(22069935-22070145)
chr7 (114-347)||(22063481-22063714)
chr7 (113-312)||(6864840-6865038)
chr7 (112-178)||(20130501-20130567)
chr7 (221-347)||(22100439-22100565)
chr7 (215-312)||(660880-660977)
chr7 (284-360)||(14076687-14076763)
chr7 (284-360)||(14386715-14386791)
chr7 (114-168)||(22088432-22088486)
chr7 (116-165)||(16846644-16846693)
chr7 (284-312)||(13416944-13416972)
chr7 (113-165)||(29881094-29881146)
chr7 (243-355)||(36260221-36260333)
[»] chr1 (2 HSPs)
chr1 (69-312)||(15961022-15961265)
chr1 (113-154)||(21855574-21855615)
[»] chr4 (3 HSPs)
chr4 (245-312)||(53774810-53774877)
chr4 (243-308)||(11971019-11971084)
chr4 (243-308)||(11981720-11981785)
[»] scaffold0867 (1 HSPs)
scaffold0867 (221-347)||(4667-4793)
[»] chr6 (2 HSPs)
chr6 (286-360)||(17369675-17369749)
chr6 (244-312)||(6947913-6947981)
[»] chr2 (1 HSPs)
chr2 (284-326)||(20975567-20975609)
[»] chr5 (2 HSPs)
chr5 (113-154)||(24331090-24331131)
chr5 (284-312)||(18964863-18964891)


Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 20141162 - 20140799
Alignment:
Q  1 actattcaagattcttctgtggatcatgattactggatcaattttgtgaatctgcatgactgtattagttggttggcaattcgcaattattctgctcgtt 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20141162 actattcaagattctcctgtggatcatgattactggatcaattttgtgaatctgcatgactgtattagttggttggcaattcgcaattattctgctcgtt 20141063  T
Q  101 atgatttcaacaatattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcgcctcctataggtttcagaga 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20141062 atgatttcaacaatattactcttgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcgcctcctataggtttcagaga 20140963  T
Q  201 agtcccgatttttgtaccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20140962 agtcccgatttttgtaccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaa 20140863  T
Q  301 tttggagttgaaagttcttggattcagcttttcaacattagctatcacaatcttcaaatatatg 364  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  20140862 tttggagttgaaaattcttggattcagctttttaacattagctatcacaatcttcaaatatatg 20140799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 20133661 - 20133298
Alignment:
Q  1 actattcaagattcttctgtggatcatgattactggatcaattttgtgaatctgcatgactgtattagttggttggcaattcgcaattattctgctcgtt 100  Q
    ||||||||||||||| | ||| |||||||||  ||||| ||| |||||||||||  ||||||||||||||||||||||||||||  |||||||| || ||    
T  20133661 actattcaagattctcccgtgaatcatgattgttggataaatgttgtgaatctgagtgactgtattagttggttggcaattcgcggttattctgttcatt 20133562  T
Q  101 atgatttcaacaatattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcgcctcctataggtttcagaga 200  Q
    |||||||||  ||||||| |||| |||| ||||||| |||||||||| || ||| ||| ||||||||||||||||| |||||||||   |||||||  ||    
T  20133561 atgatttcaggaatattattattcaccattttgtgactgtttctcttaatctggtcactgagacacattctcaactatcgcctcctcagggtttcaccga 20133462  T
Q  201 agtcccgatttttgtaccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaa 300  Q
    ||| || ||| ||||||||||||||||||||||||||||     | ||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  20133461 agtacctattgttgtaccatatctaagtttgttaaaggattgcatgtgtttttcacatgattacaaacaaactcatttggtagtatggcaaatgaaagaa 20133362  T
Q  301 tttggagttgaaagttcttggattcagcttttcaacattagctatcacaatcttcaaatatatg 364  Q
    ||||||||||||  ||||||||||||| | || |||||||||||||||||||||||||||||||    
T  20133361 tttggagttgaagattcttggattcagttatttaacattagctatcacaatcttcaaatatatg 20133298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 99 - 362
Target Start/End: Complemental strand, 20374749 - 20374486
Alignment:
Q  99 ttatgatttcaacaatattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcgcctcctataggtttcaga 198  Q
    |||||||| |||||||||||||||| | |||||| | ||| |||||||| ||||||| || || ||||||||||| |||| |||||||  ||| ||||      
T  20374749 ttatgattgcaacaatattactattcagcaatttatcattatttctcttgatttgggtactgaaacacattctcagcttttgcctcctcaaggcttcatg 20374650  T
Q  199 gaagtcccgatttttgtaccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaagg 298  Q
    ||||| |||||| ||| ||||||||||||| || |||||||   ||||||||||||| |||||||||||||||||||||| ||| ||||| |||||||||    
T  20374649 gaagtgccgattgttgcaccatatctaagtgtgctaaaggattgtctttgtttttcacatgattacaaacaaactcattttgtaatatgggaaatgaagg 20374550  T
Q  299 aatttggagttgaaagttcttggattcagcttttcaacattagctatcacaatcttcaaatata 362  Q
    |||||||||||| |  ||| |||||||| ||||| || ||||| ||| | ||||||||| ||||    
T  20374549 aatttggagttggagattcatggattcaactttttaaaattagttataataatcttcaagtata 20374486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 3 - 364
Target Start/End: Original strand, 20351823 - 20352184
Alignment:
Q  3 tattcaagattcttctgtggatcatgattactggatcaattttgtgaatctgcatgactgtattagttggttggcaattcgcaattattctgctcgttat 102  Q
    ||||||| ||||| | |||||||||| ||| | ||| ||| ||||||| || |||||   ||||| |||| ||| ||||||| ||||     ||| ||||    
T  20351823 tattcaaaattctcccgtggatcatggttattcgatgaatgttgtgaacctacatgagattattaattggctggaaattcgcgattacaactctcattat 20351922  T
Q  103 gatttcaacaatattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcgcctcctataggtttcagagaag 202  Q
    ||   |||||||||||||||  | |||||||||||  |||||||| |||||| ||| || || |||||||  |||| ||| |||  |||||||| |||||    
T  20351923 gaccgcaacaatattactatcaagcaatttgtgatcatttctcttgatttggacactgaaacgcattctctgcttttgccacctcaaggtttcacagaag 20352022  T
Q  203 tcccgatttttgtaccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatt 302  Q
    | || ||  ||||||||||||||||| ||||||||||   ||||||||||||| |||||||||||||||||||||| ||| ||||| |||||||||||||    
T  20352023 tgccaatcgttgtaccatatctaagtgtgttaaaggattgtctttgtttttcacatgattacaaacaaactcattttgtaatatgggaaatgaaggaatt 20352122  T
Q  303 tggagttgaaagttcttggattcagcttttcaacattagctatcacaatcttcaaatatatg 364  Q
    ||||||||||  ||| |||| ||| ||||| || ||||| ||| | ||||||||| ||||||    
T  20352123 tggagttgaagattcatggactcaactttttaaaattagttatgataatcttcaagtatatg 20352184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 3 - 322
Target Start/End: Original strand, 20338652 - 20338971
Alignment:
Q  3 tattcaagattcttctgtggatcatgattactggatcaattttgtgaatctgcatgactgtattagttggttggcaattcgcaattattctgctcgttat 102  Q
    ||||||| ||||| |||||  |||||||||||  || |||  |||| |||||  || |||||||||||||||||||||||||||||| ||||||| ||||    
T  20338652 tattcaaaattctcctgtgactcatgattactccatgaatgctgtgcatctgagtggctgtattagttggttggcaattcgcaattactctgctccttat 20338751  T
Q  103 gatttcaacaatattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcgcctcctataggtttcagagaag 202  Q
     ||| | | ||||||||| || | |||||||||||| | ||| || | ||| |||| ||||||||||||||  ||  ||| |||  ||||||||  ||||    
T  20338752 aattgcgagaatattactgttcagcaatttgtgattatatctattgacttgagcactgagacacattctcagattctgccacctcaaggtttcactgaag 20338851  T
Q  203 tcccgatttttgtaccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatt 302  Q
      |||||| |||||||| || ||||| ||||||| ||| |||||||||||||  |||||||| || |||||||||| ||| ||||| |||||||||||||    
T  20338852 cgccgattgttgtaccaaatttaagtgtgttaaacgactatctttgtttttcccatgattaccaaaaaactcattttgtaatatggaaaatgaaggaatt 20338951  T
Q  303 tggagttgaaagttcttgga 322  Q
     |||||||||  ||||||||    
T  20338952 aggagttgaagattcttgga 20338971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 108 - 312
Target Start/End: Complemental strand, 20361439 - 20361235
Alignment:
Q  108 caacaatattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcgcctcctataggtttcagagaagtcccg 207  Q
    |||||||||||||||| | |||||||||||  |||||||| ||||||||||||| || | ||||||||||| ||| |||  ||||||||  ||||| ||     
T  20361439 caacaatattactattcatcaatttgtgatcatttctcttgatttgggcaccgaaacgctttctcaacttttgccacctcaaggtttcacggaagtgcca 20361340  T
Q  208 atttttgtaccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttggag 307  Q
    ||| ||||||||||||||||| || |||||||   ||||||||||||| |||||||||||||||||||||| ||  | | | |||| |||||||||||||    
T  20361339 attgttgtaccatatctaagtgtgctaaaggattgtctttgtttttcacatgattacaaacaaactcattttgtgatttaggaaataaaggaatttggag 20361240  T
Q  308 ttgaa 312  Q
    |||||    
T  20361239 ttgaa 20361235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 60 - 306
Target Start/End: Complemental strand, 20126473 - 20126223
Alignment:
Q  60 ctgtattagttggttggcaattcgcaattattctgctcgttatgatttcaacaatattactattgaccaatttgtgattgtttctctttatttgggcacc 159  Q
    |||||||||||||||||||||| ||||||| ||||||| |||||||| ||| ||||| |||||| | |||||||||||| |||| ||| | ||||||||     
T  20126473 ctgtattagttggttggcaatttgcaattactctgctccttatgattgcaagaatatcactattcagcaatttgtgattatttcccttgacttgggcact 20126374  T
Q  160 gagacacattctcaactttcgcctcctataggtttcagagaagtcc----cgatttttgtaccatatctaagtttgttaaaggacaatctttgtttttca 255  Q
    |||||||||||||| |||  ||| |||  ||||||||  ||||| |    ||||| |||||||| || ||||| |||||||||||  |||||||||| |     
T  20126373 gagacacattctcagcttctgccacctcaaggtttcactgaagtacgtagcgattgttgtaccaaatataagtgtgttaaaggactgtctttgttttccc 20126274  T
Q  256 tatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttgga 306  Q
     ||||||||  |||||||||||| ||| ||||  ||||||| |||||||||    
T  20126273 catgattacgtacaaactcattttgtaatatgtaaaatgaaagaatttgga 20126223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 99 - 312
Target Start/End: Original strand, 20360954 - 20361167
Alignment:
Q  99 ttatgatttcaacaatattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcgcctcctataggtttcaga 198  Q
    |||||||| |||||| |||||| || | |||||||| ||| |||||||  |||||||||| || ||||||||| | ||||  |||||   || |||||      
T  20360954 ttatgattgcaacaaaattactcttcaacaatttgtcattatttctctcgatttgggcactgaaacacattcttagctttttcctccacaagatttcacg 20361053  T
Q  199 gaagtcccgatttttgtaccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaagg 298  Q
     |||| |||||| ||||||||||||||||| ||||| ||||   ||||||||||||| |||||||||||||||||||||| ||| ||||  |||||||||    
T  20361054 aaagtaccgattgttgtaccatatctaagtgtgttagaggattgtctttgtttttcacatgattacaaacaaactcattttgtattatgagaaatgaagg 20361153  T
Q  299 aatttggagttgaa 312  Q
    ||||||||||||||    
T  20361154 aatttggagttgaa 20361167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 119 - 360
Target Start/End: Original strand, 22080712 - 22080953
Alignment:
Q  119 ctattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcg-cctcctataggtttcagagaagtcccgatttttgtac 217  Q
    ||||||| |||||| ||||| |||| ||| |||||||||||||||||||| || || ||||| ||||||    |||||   ||||| ||  || || |||    
T  22080712 ctattgaacaatttatgattatttcacttgatttgggcaccgagacacatgct-aagtttcggcctcctcacagtttcgttgaagttccctttgttatac 22080810  T
Q  218 catatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttggagttgaaagttc 317  Q
    || |||||||| ||||||||||   ||||||||||||  |||||| |||||||||||||||  |  |||||||||||||| ||||||||||| ||   ||    
T  22080811 caaatctaagtatgttaaaggattgtctttgtttttctcatgatttcaaacaaactcattttattatatggcaaatgaagcaatttggagttcaagagtc 22080910  T
Q  318 ttggattcagcttttcaacattagctatcacaatcttcaaata 360  Q
    ||||| || | | ||||| ||||| ||||| ||||| ||||||    
T  22080911 ttggactcggttattcaaaattagttatcagaatctccaaata 22080953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 99 - 309
Target Start/End: Original strand, 22069935 - 22070145
Alignment:
Q  99 ttatgatttcaacaatattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcgcctcctataggtttcaga 198  Q
    |||| |||||||  |||||||||||||  ||||||||||| |||| ||| ||||||| |||||||||||| || |  | | |||||||   ||||||       
T  22069935 ttataatttcaaggatattactattgaggaatttgtgattatttcacttgatttgggtaccgagacacatactaagttgttgcctcctcacggtttcgat 22070034  T
Q  199 gaagtcccgatttttgtaccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaagg 298  Q
    ||||| ||  || || ||||| |||||||| | ||||||||   ||||||||||||  |||||| ||||| |||||||||  |  ||||||||||||||     
T  22070035 gaagtgccatttgttataccaaatctaagtgttttaaaggattgtctttgtttttctcatgatttcaaacgaactcattttattatatggcaaatgaagc 22070134  T
Q  299 aatttggagtt 309  Q
    |||||||||||    
T  22070135 aatttggagtt 22070145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 114 - 347
Target Start/End: Original strand, 22063481 - 22063714
Alignment:
Q  114 tattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcgcctcctataggtttcagagaagtcccgattttt 213  Q
    |||||||||||  |||||||||||| |||| ||| |||||||||| ||| || || || || | |  ||||||   |||||||| ||||| ||  || ||    
T  22063481 tattactattgggcaatttgtgattatttcacttgatttgggcactgaggcatatactaaattgtttcctcctcatggtttcagtgaagtaccatttgtt 22063580  T
Q  214 gtaccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttggagttgaaa 313  Q
     ||||| | |||||| | ||||| ||  ||||||||||||   |||||| ||||||||||||||| ||  ||||||||||||||||||||||| || ||     
T  22063581 ataccaaaactaagtgtcttaaatgattatctttgtttttttcatgatttcaaacaaactcattttgttatatggcaaatgaaggaatttggatttcaag 22063680  T
Q  314 gttcttggattcagcttttcaacattagctatca 347  Q
      ||||||| |||| | ||||| ||||| |||||    
T  22063681 agtcttggactcagttattcaaaattagttatca 22063714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 312
Target Start/End: Complemental strand, 6865038 - 6864840
Alignment:
Q  113 atattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcgcctcctataggtttcagagaagtcccgatttt 212  Q
    ||||||||||||| ||||||| |||| |||| ||| |||||| |||  ||| |||| |||   | || ||||||   |||||||  ||||| || ||| |    
T  6865038 atattactattgagcaatttgagattatttcacttcatttggacactaagatacatactcgtttgtctcctcctcagggtttcattgaagtgccaattgt 6864939  T
Q  213 tgtaccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttggagttgaa 312  Q
    ||  ||| |||||||  ||||||||||   ||| | ||||||  |||||| |||||||||||||||| || |||||  ||||||||||||||||||||||    
T  6864938 tgccccaaatctaagcgtgttaaaggattgtctctatttttctcatgatttcaaacaaactcatttg-taatatggttaatgaaggaatttggagttgaa 6864840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 20130567 - 20130501
Alignment:
Q  112 aatattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaacttt 178  Q
    ||||||| |||| ||||| |||||||| |||||||  ||||||||||  ||||||||||||||||||    
T  20130567 aatattagtattcaccaacttgtgattatttctctcgatttgggcactaagacacattctcaacttt 20130501  T

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Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 347
Target Start/End: Original strand, 22100439 - 22100565
Alignment:
Q  221 atctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttggagttgaaagttcttg 320  Q
    |||||||| | ||||| ||  |||||||||||||  |||||| |||| ||||||||||  |  |||||||||||||| ||||||||||| ||   |||||    
T  22100439 atctaagtgtcttaaatgattatctttgtttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttg 22100538  T
Q  321 gattcagcttttcaacattagctatca 347  Q
    || |||| | ||||| ||||| |||||    
T  22100539 gactcagttattcaaaattagttatca 22100565  T

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Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 312
Target Start/End: Complemental strand, 660977 - 660880
Alignment:
Q  215 taccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttggagttgaa 312  Q
    ||||| |||||||| ||||||||||   |||||||||||   | |||| ||||||||||| ||| ||  ||||||| |||||||||||| ||||||||    
T  660977 taccaaatctaagtgtgttaaaggattgtctttgtttttgtcacgatttcaaacaaactcgttttgttatatggcagatgaaggaatttcgagttgaa 660880  T

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Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 360
Target Start/End: Original strand, 14076687 - 14076763
Alignment:
Q  284 tatggcaaatgaaggaatttggagttgaaagttcttggattcagcttttcaacattagctatcacaatcttcaaata 360  Q
    |||||||||||||||||||||||||||||   ||||||| |||  || | || ||||| ||||| ||||||||||||    
T  14076687 tatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaata 14076763  T

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Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 360
Target Start/End: Original strand, 14386715 - 14386791
Alignment:
Q  284 tatggcaaatgaaggaatttggagttgaaagttcttggattcagcttttcaacattagctatcacaatcttcaaata 360  Q
    |||||||||||||||||||||||||||||   ||||||| |||  || | || ||||| ||||| ||||||||||||    
T  14386715 tatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaata 14386791  T

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Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 22088432 - 22088486
Alignment:
Q  114 tattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacat 168  Q
    |||||||||||| |||||||||||| |||| ||| |||||||||| ||| |||||    
T  22088432 tattactattgagcaatttgtgattatttcacttgatttgggcactgaggcacat 22088486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 16846693 - 16846644
Alignment:
Q  116 ttactattgaccaatttgtgattgtttctctttatttgggcaccgagaca 165  Q
    ||||| |||| |||||||||||| |||||||| |||||||||| ||||||    
T  16846693 ttactgttgagcaatttgtgattatttctcttgatttgggcacggagaca 16846644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 312
Target Start/End: Complemental strand, 13416972 - 13416944
Alignment:
Q  284 tatggcaaatgaaggaatttggagttgaa 312  Q
    |||||||||||||||||||||||||||||    
T  13416972 tatggcaaatgaaggaatttggagttgaa 13416944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 29881094 - 29881146
Alignment:
Q  113 atattactattgaccaatttgtgattgtttctctttatttgggcaccgagaca 165  Q
    |||||||| ||||||||||||| |||||||| ||| ||||||| || ||||||    
T  29881094 atattactgttgaccaatttgttattgtttcacttgatttggggactgagaca 29881146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 355
Target Start/End: Original strand, 36260221 - 36260333
Alignment:
Q  243 tctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttggagttgaaagttcttggattcagcttttcaacattagc 342  Q
    |||||| |||||  ||||||||||  ||||| |||| ||  ||||| | ||| | |||||||||||||||   ||||||||||| ||| | || ||||||    
T  36260221 tctttgcttttctaatgattacaagaaaactgattttgttatatggaagatggaagaatttggagttgaagagtcttggattcaacttattaaaattagc 36260320  T
Q  343 tatcacaatcttc 355  Q
    ||||| |||||||    
T  36260321 tatcaaaatcttc 36260333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 69 - 312
Target Start/End: Original strand, 15961022 - 15961265
Alignment:
Q  69 ttggttggcaattcgcaattattctgctcgttatgatttcaacaatattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacat 168  Q
    ||||||| ||||||||||| |||   |||| ||||||| | |  ||||| ||||||| || |||||||||||||| ||| |||||||||| |||||||||    
T  15961022 ttggttgacaattcgcaatcatttcactcgatatgattgcgaagatatttctattgaacattttgtgattgtttcacttgatttgggcactgagacacat 15961121  T
Q  169 tctcaactttcgcctcctataggtttcagagaagtcccgatttttgtaccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaac 268  Q
     ||||  |  | ||||||| ||||||||  ||||| ||   | ||  |||| |||||||| |||||||  |   ||||||||||||  |||| | |||||    
T  15961122 actcagttggcacctcctaaaggtttcaatgaagttccatatgttaaaccaaatctaagtgtgttaaataattgtctttgtttttctcatgacttcaaac 15961221  T
Q  269 aaactcatttggtagtatggcaaatgaaggaatttggagttgaa 312  Q
    |||| ||| ||||  ||||| |||||||| ||||||||| ||||    
T  15961222 aaacacatatggttatatggaaaatgaagaaatttggagctgaa 15961265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 21855615 - 21855574
Alignment:
Q  113 atattactattgaccaatttgtgattgtttctctttatttgg 154  Q
    |||||||| ||||||| |||||||||||||||||| ||||||    
T  21855615 atattactgttgaccagtttgtgattgtttctcttgatttgg 21855574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 53774810 - 53774877
Alignment:
Q  245 tttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttggagttgaa 312  Q
    |||||||||| |||||||  ||| |||||||||| ||  |||||||||||||||||||||||||||||    
T  53774810 tttgtttttcttatgattttaaagaaactcattttgttatatggcaaatgaaggaatttggagttgaa 53774877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 11971084 - 11971019
Alignment:
Q  243 tctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttggagt 308  Q
    ||||||||||||  ||||||   ||||||||||||| ||  |||||||||||||||||||||||||    
T  11971084 tctttgtttttctcatgattttgaacaaactcattttgttatatggcaaatgaaggaatttggagt 11971019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 11981785 - 11981720
Alignment:
Q  243 tctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttggagt 308  Q
    ||||||||||||  ||||||   ||||||||||||| ||  |||||||||||||||||||||||||    
T  11981785 tctttgtttttctcatgattttcaacaaactcattttgttatatggcaaatgaaggaatttggagt 11981720  T

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Target: scaffold0867 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 347
Target Start/End: Complemental strand, 4793 - 4667
Alignment:
Q  221 atctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttggagttgaaagttcttg 320  Q
    |||||||| | ||||| ||  |||||||||||||  |||||| |||| ||||||||||  |  |||||||||||||| ||||||||||| ||   |||||    
T  4793 atctaagtgtcttaaatgattatctttgtttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttg 4694  T
Q  321 gattcagcttttcaacattagctatca 347  Q
    || |||| | ||||| ||||| |||||    
T  4693 gactcagttattcaaaattagttatca 4667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 360
Target Start/End: Original strand, 17369675 - 17369749
Alignment:
Q  286 tggcaaatgaaggaatttggagttgaaagttcttggattcagcttttcaacattagctatcacaatcttcaaata 360  Q
    |||||||||||||||||||||||||||   ||||||| |||  || | || ||||| ||||| ||||||||||||    
T  17369675 tggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaata 17369749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 6947981 - 6947913
Alignment:
Q  244 ctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttggagttgaa 312  Q
    |||||||||||| |||||| |||  |||| || || ||  | |||||||||||||||||||||||||||    
T  6947981 ctttgtttttcacatgatttcaagaaaacccactttgttctttggcaaatgaaggaatttggagttgaa 6947913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 326
Target Start/End: Original strand, 20975567 - 20975609
Alignment:
Q  284 tatggcaaatgaaggaatttggagttgaaagttcttggattca 326  Q
    |||||||||||| ||||||||||||||||  ||||||||||||    
T  20975567 tatggcaaatgagggaatttggagttgaagattcttggattca 20975609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 24331131 - 24331090
Alignment:
Q  113 atattactattgaccaatttgtgattgtttctctttatttgg 154  Q
    |||||||| ||||||| |||||||||||||||||| ||||||    
T  24331131 atattactgttgaccagtttgtgattgtttctcttgatttgg 24331090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 312
Target Start/End: Complemental strand, 18964891 - 18964863
Alignment:
Q  284 tatggcaaatgaaggaatttggagttgaa 312  Q
    |||||||||||||||||||||||||||||    
T  18964891 tatggcaaatgaaggaatttggagttgaa 18964863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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