View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9354_low_1 (Length: 570)

Name: NF9354_low_1
Description: NF9354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9354_low_1
NF9354_low_1
[»] chr6 (10 HSPs)
chr6 (212-529)||(787539-787856)
chr6 (19-218)||(787293-787492)
chr6 (19-156)||(9664639-9664776)
chr6 (19-163)||(3074935-3075082)
chr6 (40-163)||(21146819-21146941)
chr6 (139-200)||(8655790-8655851)
chr6 (145-217)||(24249840-24249910)
chr6 (142-218)||(6825454-6825529)
chr6 (160-218)||(23343941-23343997)
chr6 (190-218)||(8837163-8837191)
[»] chr8 (15 HSPs)
chr8 (21-196)||(35416056-35416231)
chr8 (73-217)||(3788446-3788591)
chr8 (29-157)||(12062802-12062931)
chr8 (24-163)||(31909100-31909236)
chr8 (150-218)||(4676285-4676354)
chr8 (26-157)||(369296-369425)
chr8 (154-218)||(39327-39391)
chr8 (150-196)||(26174391-26174437)
chr8 (150-218)||(7277695-7277762)
chr8 (24-64)||(4676161-4676201)
chr8 (24-64)||(4678106-4678146)
chr8 (31-137)||(3785816-3785920)
chr8 (84-175)||(19472471-19472563)
chr8 (84-175)||(19543396-19543488)
chr8 (84-175)||(19589208-19589300)
[»] chr4 (3 HSPs)
chr4 (19-164)||(55849418-55849564)
chr4 (19-218)||(55851937-55852149)
chr4 (145-218)||(5440946-5441019)
[»] chr1 (7 HSPs)
chr1 (43-218)||(20226767-20226942)
chr1 (19-139)||(20225515-20225635)
chr1 (142-218)||(18705653-18705729)
chr1 (150-218)||(9908127-9908194)
chr1 (142-199)||(29849953-29850008)
chr1 (19-59)||(20226953-20226993)
chr1 (185-218)||(35270048-35270081)
[»] chr3 (10 HSPs)
chr3 (26-163)||(27462140-27462277)
chr3 (29-218)||(20868712-20868901)
chr3 (19-163)||(24595231-24595375)
chr3 (19-218)||(51306356-51306554)
chr3 (150-218)||(52737774-52737842)
chr3 (29-163)||(20871350-20871490)
chr3 (19-114)||(51308817-51308912)
chr3 (109-163)||(27462290-27462344)
chr3 (24-68)||(35610828-35610872)
chr3 (159-218)||(4602399-4602458)
[»] chr2 (2 HSPs)
chr2 (19-163)||(26608008-26608151)
chr2 (142-218)||(24038380-24038456)
[»] chr7 (4 HSPs)
chr7 (142-218)||(41830317-41830393)
chr7 (150-218)||(34510821-34510888)
chr7 (24-157)||(2577011-2577142)
chr7 (150-217)||(36647433-36647500)
[»] chr5 (8 HSPs)
chr5 (19-134)||(27172855-27172969)
chr5 (150-217)||(35309093-35309160)
chr5 (142-218)||(41951676-41951752)
chr5 (150-218)||(30518630-30518698)
chr5 (150-218)||(30558970-30559038)
chr5 (142-218)||(21254265-21254340)
chr5 (24-64)||(39040636-39040676)
chr5 (142-175)||(26873149-26873182)
[»] scaffold0001 (1 HSPs)
scaffold0001 (139-218)||(146666-146744)


Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 212 - 529
Target Start/End: Original strand, 787539 - 787856
Alignment:
Q  212 cattttcccttccttttttcactgattccgattcagtgtcacgttcttgattcctttcttatttcaatttcgtttttctgatctcgtgattgaggaattc 311  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  787539 cattttctcttccttttttcactgattccgattcagtgtcacgttcttgattcctttcttatttcaatttcgtttttctgatctcgtgattgaggaattc 787638  T
Q  312 cttgcatcgattgttcattccttcttttcttgatttggcaatttctttttcataatcatttgaattcatttctaaagtatgtctgttgtttaccttttca 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  787639 cttgcatcgattgttcattccttcttttcttgatttggcaatttctttttcataatcatttgaattcatttctaaagtatgtctgttgtttaccttttca 787738  T
Q  412 ttttaaaattttaattaaggatttggatataatttggatatttgcattctaaggttcaaaagatgtcatgactcagcctctgagctgtacaaaaatacca 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  787739 ttttaaaattttaattaaggatttggatataatttggatatttgcattctaaggttcaaaagatgtcatgactcagcctctgagctgtacaaaaatacca 787838  T
Q  512 actatcccattttgcctt 529  Q
    ||||||||||||||||||    
T  787839 actatcccattttgcctt 787856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 787293 - 787492
Alignment:
Q  19 aggacactagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcatttcaagtatcatcaatacaatagttt 118  Q
    |||||||||||||||||||||||||||| | ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  787293 aggacactagtttagttactatataagtcatatgattgactcatttgtaccgatctttctcattcttgtatcatttcaagtatcatcaatacaatagttt 787392  T
Q  119 tccaagcttttctctctatatctatggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 218  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  787393 tccaaacttttctctctatatctatggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 787492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 9664776 - 9664639
Alignment:
Q  19 aggacactagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcatttcaagtatcatcaatacaatagttt 118  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||  |||||| |||||||||||||||||||| ||| ||||||||||||||||    
T  9664776 aggacactagtttagttactatataagtcacatggttgactcatttgtacctatctttttcattcttgtatcatttcaactataatcaatacaatagttt 9664677  T
Q  119 tccaagcttttctctctatatctatggatgacatgttt 156  Q
    | |||||||||||||||||||| ||||||| |||||||    
T  9664676 ttcaagcttttctctctatatccatggatgccatgttt 9664639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 3074935 - 3075082
Alignment:
Q  19 aggacactagtttagttactatata--agttacatggttgactcatttgtactgatctttctcattcttgtatcatttcaagtatcatcaa-tacaatag 115  Q
    |||||||||||||||||||||||||  | | ||||||||| ||||||||||   ||||||  ||||||| ||||||||||| ||||||||| ||||||||    
T  3074935 aggacactagtttagttactatatataaatcacatggttgtctcatttgtatctatcttttccattcttatatcatttcaactatcatcaaatacaatag 3075034  T
Q  116 ttttccaagcttttctctctatatctatggatgacatgtttcctaaca 163  Q
    ||||||||||||||||||||||||| ||||||| ||||||| ||||||    
T  3075035 ttttccaagcttttctctctatatccatggatgccatgttttctaaca 3075082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 163
Target Start/End: Complemental strand, 21146941 - 21146819
Alignment:
Q  40 tataagttacatggttgactcatttgtactgatctttctcattcttgtatcatttcaagtatcatcaatacaatagttttccaag-cttttctctctata 138  Q
    ||||||| ||||| |||||||||||||||   ||||| |||||||||||||||||||| |||  ||||||||||| ||||| |||  ||||||||||||     
T  21146941 tataagtcacatg-ttgactcatttgtacctctcttt-tcattcttgtatcatttcaactattttcaatacaataattttctaagttttttctctctatt 21146844  T
Q  139 tctatggatgacatgtttcctaaca 163  Q
    |  |||||||||||||||| |||||    
T  21146843 ttcatggatgacatgtttcttaaca 21146819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 8655851 - 8655790
Alignment:
Q  139 tctatggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggat 200  Q
    |||||||||| ||||||||||||||||||||||||||  || ||||| ||||||||||||||    
T  8655851 tctatggatgccatgtttcctaacatggtatcagagcttatctggtacccaccttgaaggat 8655790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 24249840 - 24249910
Alignment:
Q  145 gatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcatttt 217  Q
    |||| |||||||||||||||||||||||||| ||| || |||||||||| ||||  |||||| ||||||||||    
T  24249840 gatgccatgtttcctaacatggtatcagagctaatctgatatccacctttaagg--attttctgctgcatttt 24249910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 6825529 - 6825454
Alignment:
Q  142 atggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 218  Q
    ||||||| |||||||||||||||||||| ||||||    ||||||||||||||||  || |||||||||||||||||    
T  6825529 atggatgccatgtttcctaacatggtattagagcatgattggtatccaccttgaacaat-ttttccgctgcattttc 6825454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 23343941 - 23343997
Alignment:
Q  160 aacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 218  Q
    |||||||||||||||  ||  ||||||||||||||||||||||||||||||||| ||||    
T  23343941 aacatggtatcagag--aacctggtatccaccttgaaggatattttccgctgcactttc 23343997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 190 - 218
Target Start/End: Complemental strand, 8837191 - 8837163
Alignment:
Q  190 ccttgaaggatattttccgctgcattttc 218  Q
    |||||||||||||||||||||||||||||    
T  8837191 ccttgaaggatattttccgctgcattttc 8837163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 6e-54; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 35416231 - 35416056
Alignment:
Q  21 gacactagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcatttcaagtatcatcaatacaatagttttc 120  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||| |||||  ||||| |||||||||||||| || ||| ||||||||||||||     
T  35416231 gacactagtttagtgactatataagtcacatggttgactcatttgtacttatcttcttcattattgtatcatttcaactaccattaatacaatagttttt 35416132  T
Q  121 caagcttttctctctatatctatggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaa 196  Q
    ||||||||||||||||| | |||||||| |||||||| |||||||||||||||||| |  ||||||||||||||||    
T  35416131 caagcttttctctctatttttatggatgccatgtttcttaacatggtatcagagcataattggtatccaccttgaa 35416056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 73 - 217
Target Start/End: Complemental strand, 3788591 - 3788446
Alignment:
Q  73 ctttctcattcttgtatcatttcaagtatcatcaatacaatagttttccaagctt-ttctctctatatctatggatgacatgtttcctaacatggtatca 171  Q
    |||| |||||||||||||||||||| ||| |||||||||||| ||||| || ||| |||||||||| |  ||||||| ||||||||  ||||||||||||    
T  3788591 ctttttcattcttgtatcatttcaactattatcaatacaataattttctaaacttcttctctctattttcatggatgccatgtttctcaacatggtatca 3788492  T
Q  172 gagcaaatatggtatccaccttgaaggatattttccgctgcatttt 217  Q
    |||||    ||||||||||||||||  || ||||||||||||||||    
T  3788491 gagcatgattggtatccaccttgaacaattttttccgctgcatttt 3788446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 29 - 157
Target Start/End: Original strand, 12062802 - 12062931
Alignment:
Q  29 tttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatca-tttcaagtatcatcaatacaatagttttccaagctt 127  Q
    |||||||||||||||||| |||||||||||||||||||||  |  | | |||||||||||| | ||||||  |||||||| | |||||||||| ||||||    
T  12062802 tttagttactatataagtcacatggttgactcatttgtacccacatctttcattcttgtattattttcaaccatcatcaagagaatagttttctaagctt 12062901  T
Q  128 ttctctctatatctatggatgacatgtttc 157  Q
    |||||||||| |  ||||||| ||||||||    
T  12062902 ttctctctattttcatggatgccatgtttc 12062931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 24 - 163
Target Start/End: Complemental strand, 31909236 - 31909100
Alignment:
Q  24 actagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcatttcaagtatcatcaatacaatagttttccaa 123  Q
    ||||||||||| ||||||||||| ||| | |||||||||||||||   ||| | ||||| ||||||| |||||| ||||||||||||||||| |||  ||    
T  31909236 actagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaa 31909139  T
Q  124 gcttttctctctatatctatggatgacatgtttcctaaca 163  Q
    |||||||||||||| |  ||||||| ||||||||||||||    
T  31909138 gcttttctctctattttcatggatg-catgtttcctaaca 31909100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 4676285 - 4676354
Alignment:
Q  150 catgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggata-ttttccgctgcattttc 218  Q
    |||||||||||| ||||||||||||| ||  ||||||||||||||||||||| |||||||||||||||||    
T  4676285 catgtttcctaatatggtatcagagctaacctggtatccaccttgaaggatatttttccgctgcattttc 4676354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 369296 - 369425
Alignment:
Q  26 tagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcatttcaagtatcatcaatacaatagttttccaagc 125  Q
    |||||||||||||| |||||| | ||||||| || |||||||| ||||| | | ||| ||||||| |||||| ||||||||||||||||||| |  |||     
T  369296 tagtttagttactaaataagtcatatggttggctaatttgtaccgatctcttttatttttgtatcttttcaactatcatcaatacaatagttgt--aagt 369393  T
Q  126 ttttctctctatatctatggatgacatgtttc 157  Q
    |||||||| ||| |  ||||||| ||||||||    
T  369394 ttttctctttattttcatggatgtcatgtttc 369425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 39327 - 39391
Alignment:
Q  154 tttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 218  Q
    |||| ||||||| ||||||||| |||  | |||||||||||||||||||||||||||||||||||    
T  39327 tttcttaacatgatatcagagctaatccgatatccaccttgaaggatattttccgctgcattttc 39391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 26174391 - 26174437
Alignment:
Q  150 catgtttcctaacatggtatcagagcaaatatggtatccaccttgaa 196  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||    
T  26174391 catgtttactaacatggtatcagaacaaatatggtatccaccttgaa 26174437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 7277762 - 7277695
Alignment:
Q  150 catgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 218  Q
    |||||||||||||||||||||||||||    ||||||||||||||||  || |||||||||||||||||    
T  7277762 catgtttcctaacatggtatcagagcatgattggtatccaccttgaacaat-ttttccgctgcattttc 7277695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 4676161 - 4676201
Alignment:
Q  24 actagtttagttactatataagttacatggttgactcattt 64  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  4676161 actagtttagttactatataagtcacagggttgactcattt 4676201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 4678106 - 4678146
Alignment:
Q  24 actagtttagttactatataagttacatggttgactcattt 64  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  4678106 actagtttagttactatataagtcacaaggttgactcattt 4678146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 3785920 - 3785816
Alignment:
Q  31 tagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcatttcaagtatcatcaatacaatagttttccaagctt-tt 129  Q
    |||| ||||||||||| ||| | |||||||||||||| | | |||| | |||||||||||||||||| ||| |||||||||||| ||| | |||||| ||    
T  3785920 tagtcactatataagtcacaag-ttgactcatttgta-tca-cttttttattcttgtatcatttcaactattatcaatacaataatttcctaagcttctt 3785824  T
Q  130 ctctctat 137  Q
    ||||||||    
T  3785823 ctctctat 3785816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 19472563 - 19472471
Alignment:
Q  84 ttgtatcatttcaagtatcatcaatacaatagttttccaagctttt-ctctctatatctatggatgacatgtttcctaacatggtatcagagc 175  Q
    |||||||||||||| |||  |||||| |||| |||   |||||||| |||||||| |  ||||||| ||||||||  ||||||||||||||||    
T  19472563 ttgtatcatttcaactattttcaatataataatttcttaagctttttctctctattttcatggatgccatgtttctcaacatggtatcagagc 19472471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 19543488 - 19543396
Alignment:
Q  84 ttgtatcatttcaagtatcatcaatacaatagttttccaagctttt-ctctctatatctatggatgacatgtttcctaacatggtatcagagc 175  Q
    |||||||||||||| |||  |||||| |||| |||   |||||||| |||||||| |  ||||||| ||||||||  ||||||||||||||||    
T  19543488 ttgtatcatttcaactattttcaatataataatttcttaagctttttctctctattttcatggatgccatgtttctcaacatggtatcagagc 19543396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 19589208 - 19589300
Alignment:
Q  84 ttgtatcatttcaagtatcatcaatacaatagttttccaagctttt-ctctctatatctatggatgacatgtttcctaacatggtatcagagc 175  Q
    |||||||||||||| |||  |||||| |||| |||   |||||||| |||||||| |  ||||||| ||||||||  ||||||||||||||||    
T  19589208 ttgtatcatttcaactattttcaatataataatttcttaagctttttctctctattttcatggatgccatgtttctcaacatggtatcagagc 19589300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 6e-51; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 55849564 - 55849418
Alignment:
Q  19 aggacactagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcatttcaagtatcatcaatacaatagttt 118  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||  ||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  55849564 aggacactagttcagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatcatttcaactatcatcaatacaatagttt 55849465  T
Q  119 t-ccaagcttttctctctatatctatggatgacatgtttcctaacat 164  Q
    | ||||||||||||||||||||| ||||||| |||||||||||||||    
T  55849464 tcccaagcttttctctctatatccatggatgccatgtttcctaacat 55849418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 55852149 - 55851937
Alignment:
Q  19 aggacactagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcatttcaagtatcatcaatacaatag--- 115  Q
    |||||||||| ||||||||||||||| | |||||||||||||||||||| | ||||||  ||||||||||||||||||| |||||||||||||||||       
T  55852149 aggacactagattagttactatataactaacatggttgactcatttgtagttatcttttacattcttgtatcatttcaactatcatcaatacaatagtac 55852050  T
Q  116 ------ttttccaagcttt----tctctctatatctatggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatatttt 205  Q
          |||||||||||||    |||||||||||| ||||||| ||||||||||||||| ||||||||||||   |||||||||||| ||| ||||||||    
T  55852049 aatagtttttccaagcttttctctctctctatatccatggatgccatgtttcctaacatcgtatcagagcaagattggtatccacctcgaatgatatttt 55851950  T
Q  206 ccgctgcattttc 218  Q
    |||||||||||||    
T  55851949 ccgctgcattttc 55851937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 5440946 - 5441019
Alignment:
Q  145 gatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 218  Q
    |||| |||||||||||||||||||||||||| ||  |||||||||  |||||||||||||||| ||||||||||    
T  5440946 gatgccatgtttcctaacatggtatcagagctaacctggtatccattttgaaggatattttcccctgcattttc 5441019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 43 - 218
Target Start/End: Complemental strand, 20226942 - 20226767
Alignment:
Q  43 aagttacatggttgactcatttgtactgatctttctcattcttgtatcatttcaagtatcatcaatacaatagttttccaagcttttct--ctctatatc 140  Q
    |||||||||||||||||| |||||||  |||||| |||||||||||||||||||| ||||||||||||||||||||| ||| |||||||  |||||||||    
T  20226942 aagttacatggttgactcttttgtacctatctttttcattcttgtatcatttcaattatcatcaatacaatagtttttcaaacttttctctctctatatc 20226843  T
Q  141 tatggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 218  Q
     ||| ||| | |||||||||||||||||||||||| ||| |||||||| |||||||||  ||||||||||||||||||    
T  20226842 catgaatgccgtgtttcctaacatggtatcagagctaatctggtatcctccttgaagg--attttccgctgcattttc 20226767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 20225635 - 20225515
Alignment:
Q  19 aggacactagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcatttcaagtatcatcaatacaatagttt 118  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||  ||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  20225635 aggacactagtttagttactatataagtcacatggttgactcttttgtacctatcttttccattcttgtatcatttcaattatcatcaatacaatagttt 20225536  T
Q  119 tccaagcttttctctctatat 139  Q
    | |||||||||||||||||||    
T  20225535 tgcaagcttttctctctatat 20225515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 18705729 - 18705653
Alignment:
Q  142 atggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 218  Q
    ||||||| ||||||| |||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||    
T  18705729 atggatgccatgttttctaacatggtatcagagctaatctggtatccaccttgaaggattttttccgctgcattttc 18705653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 9908194 - 9908127
Alignment:
Q  150 catgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 218  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||| || ||||||||||||| ||||    
T  9908194 catgtttcctaacatggtatcagagctaatctggtatccaccttgaa-gaaattttccgctgcactttc 9908127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 29850008 - 29849953
Alignment:
Q  142 atggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaagga 199  Q
    ||||||| |||||||| |||||||||||||||||||  ||||||||||||||||||||    
T  29850008 atggatgccatgtttcataacatggtatcagagcaa--atggtatccaccttgaagga 29849953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 20226993 - 20226953
Alignment:
Q  19 aggacactagtttagttactatataagttacatggttgact 59  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  20226993 aggacactagtttagttactatataagtcatatggttgact 20226953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 35270081 - 35270048
Alignment:
Q  185 atccaccttgaaggatattttccgctgcattttc 218  Q
    |||||||||||| |||||||||||||||||||||    
T  35270081 atccaccttgaatgatattttccgctgcattttc 35270048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 5e-48; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 26 - 163
Target Start/End: Original strand, 27462140 - 27462277
Alignment:
Q  26 tagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcatttcaagtatcatcaatacaatagttttccaagc 125  Q
    ||||||||||||||||||||| | |||||||||||||||||||  |||||| |||||||||||||||||||| ||| |||||||||||||||||||||||    
T  27462140 tagtttagttactatataagtcatatggttgactcatttgtacctatctttttcattcttgtatcatttcaactataatcaatacaatagttttccaagc 27462239  T
Q  126 ttttctctctatatctatggatgacatgtttcctaaca 163  Q
    ||||||||||||||| ||||||| ||||||| ||||||    
T  27462240 ttttctctctatatccatggatgccatgtttactaaca 27462277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 20868712 - 20868901
Alignment:
Q  29 tttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcat-ttcaagtatcatcaatacaatagttttccaagctt 127  Q
    |||||||||||||||||| |||||||||||| ||||||||  |||||| |||||||||||| || ||||| |||||||||||||||||||||| ||||||    
T  20868712 tttagttactatataagtcacatggttgacttatttgtacctatctttttcattcttgtattatgttcaactatcatcaatacaatagttttctaagctt 20868811  T
Q  128 ttctctctatatctatggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 218  Q
    |||||||| | |  ||||||| ||||||||| |||||||||||||||||    ||||||||||||||||  | ||||||||||||||||||    
T  20868812 ttctctctcttttcatggatgccatgtttcccaacatggtatcagagcatgattggtatccaccttgaaaca-attttccgctgcattttc 20868901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 24595231 - 24595375
Alignment:
Q  19 aggacactagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatca-tttcaagtatcatcaatacaatagtt 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||| |||||| ||||||||||||||||| |    
T  24595231 aggacactagtttagttactatataagtcacatggttgactcatttgtactaatctttttcattcttgtatcattttcaactatcatcaatacaatag-t 24595329  T
Q  118 ttccaagcttttctctctatatctatggatgacatgtttcctaaca 163  Q
    ||| |||||||||||||||| |  |||||||   ||||||||||||    
T  24595330 ttctaagcttttctctctatcttcatggatgttgtgtttcctaaca 24595375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 51306356 - 51306554
Alignment:
Q  19 aggacactagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcatttcaagtatcatcaatacaatagttt 118  Q
    ||||||||||| |||||||||||||| ||| |||||||||||| || |||| |||| | | ||| ||||||||||| || ||| ||||||||||||  ||    
T  51306356 aggacactagtgtagttactatataacttatatggttgactca-ttatactaatctcttttatttttgtatcattttaactattatcaatacaata-att 51306453  T
Q  119 tccaagc-ttttctctctatatctatggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcatttt 217  Q
    || |||| |||||||||||| |  ||||||| ||||||||  |||||||||||||||||    ||||||||||||||||  || ||||||||||||||||    
T  51306454 tctaagctttttctctctattttcatggatgtcatgtttctcaacatggtatcagagcatgattggtatccaccttgaacaattttttccgctgcatttt 51306553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 52737842 - 52737774
Alignment:
Q  150 catgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 218  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  52737842 catgtttcctaacatggtatcagagcaaatctggtatccaccttgaaggatattttccgctgcattttc 52737774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 20871350 - 20871490
Alignment:
Q  29 tttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatca-tttcaagtatcat-----caatacaatagttttcca 122  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||| |||||||||||| | |||||| ||||||     |||||||||||||||| |    
T  20871350 tttagttactatataagtcacatggttgactcatttgtacctatctttttcattcttgtattattttcaactatcatcaatacaatacaatagttttcta 20871449  T
Q  123 agcttttctctctatatctatggatgacatgtttcctaaca 163  Q
    ||||||||||||| | |  ||||||| ||||||||| ||||    
T  20871450 agcttttctctctcttttcatggatgtcatgtttcccaaca 20871490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 51308817 - 51308912
Alignment:
Q  19 aggacactagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcatttcaagtatcatcaatacaata 114  Q
    ||||| ||||| |||||||||||||||| |||||||||||||||||||||| |||| | | |||||||||||||||||| ||| ||||||||||||    
T  51308817 aggacgctagtgtagttactatataagtcacatggttgactcatttgtactaatctcttttattcttgtatcatttcaactattatcaatacaata 51308912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 27462290 - 27462344
Alignment:
Q  109 acaatagttttccaagcttttctctctatatctatggatgacatgtttcctaaca 163  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||    
T  27462290 acaatagttttccaagcttttctctctatatccatggatgccatgtttactaaca 27462344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 35610828 - 35610872
Alignment:
Q  24 actagtttagttactatataagttacatggttgactcatttgtac 68  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  35610828 actagtttagttactatataagtcacaaggttgactcatttgtac 35610872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 4602399 - 4602458
Alignment:
Q  159 taacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 218  Q
    ||||||||||||||||| ||  | |||||||||||||||||  |||||||||||||||||    
T  4602399 taacatggtatcagagctaacctagtatccaccttgaaggaatttttccgctgcattttc 4602458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 26608151 - 26608008
Alignment:
Q  19 aggacactagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatca-tttcaagtatcatcaatacaatagtt 117  Q
    |||| ||||||| ||||||||||||||| ||| ||||||||||| |||||  |||||| |||||||||||||| |||||| ||||||||||||||||  |    
T  26608151 aggatactagttcagttactatataagtcacaaggttgactcatctgtacctatctttttcattcttgtatcattttcaactatcatcaatacaata--t 26608054  T
Q  118 ttccaagcttttctctctatatctatggatgacatgtttcctaaca 163  Q
    ||| |||||||||||||||| |  ||||||| |||||||| |||||    
T  26608053 ttctaagcttttctctctattttcatggatgtcatgtttcttaaca 26608008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 24038380 - 24038456
Alignment:
Q  142 atggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 218  Q
    ||||||| ||||||| ||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||    
T  24038380 atggatgccatgttttctaacatggtatcagagcctggttggtatccaccttgaaggatattttccgctgcattttc 24038456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 41830317 - 41830393
Alignment:
Q  142 atggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 218  Q
    |||||||||||||||||||||||||||| ||||| ||  ||||||||||||||||||||||||||||||||||||||    
T  41830317 atggatgacatgtttcctaacatggtattagagctaacttggtatccaccttgaaggatattttccgctgcattttc 41830393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 34510821 - 34510888
Alignment:
Q  150 catgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 218  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  34510821 catgtttcctaacatggtatcagagctaatctggtatccaccttgaagga-attttccgctgcattttc 34510888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 2577011 - 2577142
Alignment:
Q  24 actagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcatttcaagtatcatcaatacaatagttttccaa 123  Q
    |||||| |||| ||||||||||| ||| | |||||||||||||| | | |||| |||||||||||||||||||| ||| |||||||||||| ||||| ||    
T  2577011 actagtatagtcactatataagtcacaag-ttgactcatttgta-tca-ctttttcattcttgtatcatttcaactattatcaatacaataattttctaa 2577107  T
Q  124 gctt-ttctctctatatctatggatgacatgtttc 157  Q
    |||| |||||||||| |  ||||||| ||||||||    
T  2577108 gcttcttctctctattttcatggatgccatgtttc 2577142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 36647500 - 36647433
Alignment:
Q  150 catgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcatttt 217  Q
    ||||||| |||| ||||||||||||| ||| |||||| || |||||||||||||||||||||||||||    
T  36647500 catgttttctaatatggtatcagagctaatctggtattcatcttgaaggatattttccgctgcatttt 36647433  T

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Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 27172969 - 27172855
Alignment:
Q  19 aggacactagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcatttcaagtatcatcaatacaatagttt 118  Q
    |||| ||||||||||||||||||||||| |  | | |||||||||||||   ||||||  ||||||||||||||||||| ||||||||||| ||||||||    
T  27172969 aggatactagtttagttactatataagtca-ttaggtgactcatttgtaactatcttttccattcttgtatcatttcaactatcatcaatagaatagttt 27172871  T
Q  119 tccaagcttttctctc 134  Q
    ||||||||||||||||    
T  27172870 tccaagcttttctctc 27172855  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 35309160 - 35309093
Alignment:
Q  150 catgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcatttt 217  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  35309160 catgtttcctaacatggtatcagagctaatctggtatccaccttgaaggatattttccgctgcatttt 35309093  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 41951752 - 41951676
Alignment:
Q  142 atggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 218  Q
    ||||||| |||||||||||||||||||| ||||| ||| |||||||| |||||||||||||||||||||||||||||    
T  41951752 atggatgccatgtttcctaacatggtattagagctaatctggtatccgccttgaaggatattttccgctgcattttc 41951676  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 30518698 - 30518630
Alignment:
Q  150 catgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 218  Q
    |||||||  ||||||||||| ||||| ||| ||||||||||||| || |||||||||||||||||||||    
T  30518698 catgttttataacatggtataagagctaatctggtatccaccttaaaagatattttccgctgcattttc 30518630  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 30559038 - 30558970
Alignment:
Q  150 catgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 218  Q
    |||||||  ||||||||||| ||||| ||| ||||||||||||| || |||||||||||||||||||||    
T  30559038 catgttttataacatggtataagagctaatctggtatccaccttaaaagatattttccgctgcattttc 30558970  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 21254265 - 21254340
Alignment:
Q  142 atggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 218  Q
    ||||||| |||||||||||||||||||||| ||||    ||||||||||||||||  || |||||||||||||||||    
T  21254265 atggatgccatgtttcctaacatggtatcatagcatgattggtatccaccttgaacaat-ttttccgctgcattttc 21254340  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 39040676 - 39040636
Alignment:
Q  24 actagtttagttactatataagttacatggttgactcattt 64  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  39040676 actagtttagttactatataagtcacaaggttgactcattt 39040636  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 175
Target Start/End: Complemental strand, 26873182 - 26873149
Alignment:
Q  142 atggatgacatgtttcctaacatggtatcagagc 175  Q
    ||||||| ||||||||||||||||||||||||||    
T  26873182 atggatgccatgtttcctaacatggtatcagagc 26873149  T

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Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 146744 - 146666
Alignment:
Q  139 tctatggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 218  Q
    ||||| |||| |||||||||||||||||||||| ||||    ||||||||||||||||  || |||||||||||||||||    
T  146744 tctatagatgccatgtttcctaacatggtatcaaagcatgattggtatccaccttgaacaat-ttttccgctgcattttc 146666  T

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