View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9354_low_10 (Length: 269)
Name: NF9354_low_10
Description: NF9354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9354_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 2592260 - 2592519
Alignment:
| Q |
1 |
tggtggagtactagccttaggtggagggctagccttaggtgttgttgaaggtggaggaggacttgttggagttggtttgcatgaaccacaagcatttgaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2592260 |
tggtggagtactagccttaggtggagggctagccttaggtgttgtagaaggtggtggaggacttgttggagttggtttgcatgaaccacaagcatgtgaa |
2592359 |
T |
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| Q |
101 |
aatgttgaataagaaaggagagaaaataatataattagtgcactaagcttgttggaagccattcttaagaaatgtgtacactaattgt---------ttt |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2592360 |
aatgttgaataagaaaggagagaaaataatataattagtgcactaagcttgttggaagccattcttaagaaatgtgtacactaattgtttttgtatgttt |
2592459 |
T |
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| Q |
192 |
tgtatgttttgatgttgaatgaaagaatgagaacttgaaccattttataggcaaagtttt |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2592460 |
tgtatgttttgatgttgaatgaaagaatgagaacttgaaccattttataggcaaagtttt |
2592519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 2600063 - 2600294
Alignment:
| Q |
20 |
ggtggagggctagccttaggtgttgttgaaggtggaggaggacttgttggagttggtttgcatgaaccacaagcatttgaaaatgttgaataagaaagga |
119 |
Q |
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|||||||| | |||||| |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2600063 |
ggtggaggacaagcctttggtgtttttgaaggtggaggtggacttggtggagttggtttgcatgaaccacaagcatttgaaaatgttgaataagcaagga |
2600162 |
T |
|
| Q |
120 |
gagaaaataatataattagtgcactaagcttgttggaagccattcttaagaaatgtgtacactaattgtttttgtatgttttgatgttgaatgaaagaat |
219 |
Q |
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| T |
2600163 |
gagaaaataatataattagtgcactatgcttgttggaagccattcttaagaaatgtgtacactaattgtttttgtatgttttgatgttgaatgatagaat |
2600262 |
T |
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| Q |
220 |
gagaacttgaaccattttataggcaaagtttt |
251 |
Q |
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| T |
2600263 |
gagaacttgacccattttataggcaaagtttt |
2600294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 2578698 - 2578927
Alignment:
| Q |
20 |
ggtggagggctagccttaggtgttgttgaaggtggaggaggacttgttggagttggtttgcatgaaccacaagcatttgaaaatgttgaataagaaagga |
119 |
Q |
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|||||||| | |||||| |||||| ||||||||||||||||||| |||||||||||||||||||| | ||| ||| |||||||||||||| || || || |
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| T |
2578698 |
ggtggaggacaagcctttggtgtttttgaaggtggaggaggactaattggagttggtttgcatgaagcgcaatcatgtgaaaatgttgaatgagcaaaga |
2578797 |
T |
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| Q |
120 |
gagaaaataatataattagtgcactaagcttgttggaagccattcttaagaaatgtgtacacta--attgtttttgtatgttttgatgttgaatgaaaga |
217 |
Q |
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| T |
2578798 |
gagaaaatattataattagtgcactaagcttgttggaagccattcttaagaaatgtgtgtactaatattgtttttgtatgttttgatgttgaatgaaaga |
2578897 |
T |
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| Q |
218 |
atga-gaacttgaaccattttataggcaaa |
246 |
Q |
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|||| |||||| | |||||||||||||| |
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| T |
2578898 |
atgatcaacttggccgattttataggcaaa |
2578927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 67 - 211
Target Start/End: Original strand, 2608607 - 2608748
Alignment:
| Q |
67 |
tggagttggtttgcatgaaccacaagcatttgaaaatgttgaataagaaaggagagaaaataatataattagtgcactaagcttgttggaagccattctt |
166 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||| || |
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| T |
2608607 |
tggagttggtttgcatgaaccacaagcatgtgaaaatgttgaataagcaaggagagaaaacaatataattagggcactaagcttgttggaagccattgtt |
2608706 |
T |
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| Q |
167 |
aagaaatgtgtacactaattgtttttgtatgttttgatgttgaat |
211 |
Q |
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|||||| ||||| |||| || |||||| |||||||||||||||| |
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| T |
2608707 |
aagaaa--tgtacgctaa-tgcttttgtgtgttttgatgttgaat |
2608748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 2600011 - 2600072
Alignment:
| Q |
1 |
tggtggagtactagccttaggtggagggctagccttaggtgttgttgaaggtggaggaggac |
62 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
2600011 |
tggtggagttatagccgtaggtggagggctagccttaggtgttgtagaaggtggtggaggac |
2600072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 2578664 - 2578707
Alignment:
| Q |
19 |
aggtggagggctagccttaggtgttgttgaaggtggaggaggac |
62 |
Q |
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| T |
2578664 |
aggtggagggctagccttaggcgttgttgaaggtggtggaggac |
2578707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 2578542 - 2578579
Alignment:
| Q |
2 |
ggtggagtactagccttaggtggagggctagccttagg |
39 |
Q |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
2578542 |
ggtggagtactagccttaggtggagggctagccgtagg |
2578579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 2578620 - 2578652
Alignment:
| Q |
2 |
ggtggagtactagccttaggtggagggctagcc |
34 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
2578620 |
ggtggagtactagccttaggtggagggctagcc |
2578652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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