View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9354_low_12 (Length: 240)
Name: NF9354_low_12
Description: NF9354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9354_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 48490463 - 48490245
Alignment:
| Q |
1 |
ctcttttccacaatcacataagcatccatccttatttacagaaaaactaaaagctttcaactcagcaaagaatagcatcatttaacataatgaaaattgg |
100 |
Q |
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| T |
48490463 |
ctcttttccacaatcacataagcatccatccttatatacagaaatactaac--ctttcaactcagcaaagaataccatcatttaacataatgaaaattgg |
48490366 |
T |
|
| Q |
101 |
catgaaaaatgcttttaagaagaatccaacgttaatgtgaaatcaagaaactacaactttaatgtaaaaatacttaattcaaacattccattattttctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48490365 |
catgaaaaatgcttttaagaagaatccaacgttaatgtgaaatcaagaaactacaactttaatgtaaaaatacttaattcaaacattccattattttctt |
48490266 |
T |
|
| Q |
201 |
tggaactaaaacataatttac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
48490265 |
tggaactaaaacataatttac |
48490245 |
T |
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