View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9354_low_13 (Length: 238)
Name: NF9354_low_13
Description: NF9354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9354_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 30727372 - 30727594
Alignment:
| Q |
1 |
ctgttactactgt--ggtagtgtaacttaacttcaactatttagtatgtacctaaagtgtgtgccataatttaactcatttctattgtaccaaaaacaag |
98 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
30727372 |
ctgttactactgtctggtagtgtaacttaacttcaactatttagtatgtacctaaagtgtgtgccataatttaacacatttccattgtaccaaaaacaag |
30727471 |
T |
|
| Q |
99 |
tgtatagcatttctgttccaccacagtaactattttaaaattatagtacgtagaaaacgtatttactcttctttcctctcat-atgcttgcttgccaatt |
197 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30727472 |
tgtatagcatttctgttccaccacagtaactattttataattatagtatgtagaaaacgtatttactcttctttcctctcatcatgcttgcttgccaatt |
30727571 |
T |
|
| Q |
198 |
ttaaacctaataaataacaatgc |
220 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
30727572 |
ttaaacctaataaataacaatgc |
30727594 |
T |
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