View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9354_low_2 (Length: 541)
Name: NF9354_low_2
Description: NF9354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9354_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 40908910 - 40909131
Alignment:
| Q |
11 |
gcagagagggaaataacagagagagtggcgcgggg-ggcttgcacagttagagacagcttgggaaatcacaaattccttgtactggttgaacctagagat |
109 |
Q |
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| T |
40908910 |
gcagagagggaaataacagagagagtggcgcgggggggcttgcacagttagagacggcttgagaaatcacaaattccttgtactggttgaacctagagat |
40909009 |
T |
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| Q |
110 |
aagatagggattgatttgaaccgaatcactttaaaaaggaacgattactgtt-ctgtagtgtatgatttgtttttagatgtaacatgcttcattgtatta |
208 |
Q |
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| T |
40909010 |
aagatagggattgatttgaaccgaatcactttaaaaaggaacgattactgttcctgtagtgtatgatttgtttttagatgtaacatgcttcattgtatta |
40909109 |
T |
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| Q |
209 |
tttgtatattataaagttatga |
230 |
Q |
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| T |
40909110 |
tttgtatattataaagttatga |
40909131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 233 - 525
Target Start/End: Original strand, 40917278 - 40917551
Alignment:
| Q |
233 |
aatcaacgtggccaaaagtaggaaaaaccagaagtaggnnnnnnngtgttgaggttggttaaagccttgaagtggaaattgcttctagtagtaggagtga |
332 |
Q |
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| T |
40917278 |
aatcaacatggccaaaagtaggaaaaaccagaagtaggaaaaaaagtgttgaggttggttaaagccttgaagtggagtttgcttctagtagtaggagtga |
40917377 |
T |
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| Q |
333 |
aggtatttgattaatcctgtaattaagtaaatacaataacaggtcacatgtttagtcaaaaataaaaattaaatatttgcaaattattagcgacattcgt |
432 |
Q |
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| T |
40917378 |
aggtatttgattaatcctgtaattaattaagtacaataacaggtcacatgtttagtcaaaaataaaaattaaatatttgcaaattattagcgacattcgt |
40917477 |
T |
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| Q |
433 |
agattattgtgggttaatgtgtttgtgaataattagtatgttcacactgggaaacaataatgaacacgtttcattagttatattccaagtcat |
525 |
Q |
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| T |
40917478 |
agatta-------------------tgaataattagtatgttcacactgggaaacaataatgaacacgtttcattagttatattccaagtcat |
40917551 |
T |
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