View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9354_low_7 (Length: 302)
Name: NF9354_low_7
Description: NF9354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9354_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 286
Target Start/End: Original strand, 37598863 - 37599133
Alignment:
| Q |
8 |
aagcagagacatgaaaagtttgacaacttgattatctcatattgatttaagatgaatgaaagtgacaaatacactatcatgtatatctatgtagatgact |
107 |
Q |
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| T |
37598863 |
aagcaaagacatgaaaagtttgacaacttgattatctcatattgatttaaggtgaatgaaagtgacaaatacactatcatgtatatctatgtagatgatt |
37598962 |
T |
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| Q |
108 |
tactcatttaattcaagttcacaagcaattcaattcaaatcaaatgaaccaagtgaacacaaaaatagctcataaaccttttattttgtctaaaaagcac |
207 |
Q |
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| T |
37598963 |
tactcatttaattcaagttcacaagcaattcaattcaaatcaaatgaaccaa--------aaaaatagctcataaaccttttattttgtccaaaaagcac |
37599054 |
T |
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| Q |
208 |
ttaaataaatggataagaacactattggaaaaactaataatctttcattttactataccctcgtaaaatgagtgcttag |
286 |
Q |
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| T |
37599055 |
ttaaataaatggataagaacactattggaaaaactaataatctttcattttactataccctcgtaaaatgagtgcttag |
37599133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 163 - 286
Target Start/End: Original strand, 37605207 - 37605328
Alignment:
| Q |
163 |
aacacaaaaatagctcataaaccttttattttgtctaaaaagcacttaaataaatggataagaacactattggaaaaactaataatctttcattttacta |
262 |
Q |
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| T |
37605207 |
aacacaaaaatagctcataaaccttttaattggtctaaaa--cacttaaataaattgataagaacactattggaaaaaccaataatctttcattttacta |
37605304 |
T |
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| Q |
263 |
taccctcgtaaaatgagtgcttag |
286 |
Q |
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| T |
37605305 |
taccctcgtaaaatgagtgcttag |
37605328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 37605054 - 37605123
Alignment:
| Q |
8 |
aagcagagacatgaaaagtttgacaacttgattatctcatattgatttaagatgaatgaaagtgacaaat |
77 |
Q |
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| T |
37605054 |
aagcaaagacatgaaaaatttgacaatttgattatttcatattgatttaaggtgaatgaaagtgacaaat |
37605123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 37605153 - 37605208
Alignment:
| Q |
82 |
tatcatgtatatctatgtagatgacttactc--atttaattcaagttcacaagcaa |
135 |
Q |
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| T |
37605153 |
tatcgtgtatatctatgtagatgacttgctcatatttgattcaagttcgcaagcaa |
37605208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 10327478 - 10327530
Alignment:
| Q |
165 |
cacaaaaatagctcataaaccttttattttgtctaaaaagcacttaaataaat |
217 |
Q |
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| T |
10327478 |
cacaaaaatagctcataaacctcttaattggtctaagaaccaattaaataaat |
10327530 |
T |
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