View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9354_low_8 (Length: 288)
Name: NF9354_low_8
Description: NF9354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9354_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 275
Target Start/End: Complemental strand, 21549482 - 21549216
Alignment:
| Q |
12 |
tggtggaggctgtggtggtggaataagtagaggagtgttaacactagtgttggcaacttgatgatttggttgctgcagaaaaggaaataaaattaatggt |
111 |
Q |
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| T |
21549482 |
tggtggaggctgtggtggtggaataagtagaggagtgttaacactagtgttggcaacttgatgatttggttgctgcaaaaaaggaaataaaattaatggt |
21549383 |
T |
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| Q |
112 |
aaagatacataaaatcaaatatttggtatattcaagagaagggtataaacaaaagtaaagctcgaatatttatcttttgag---nnnnnnnctttccttt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21549382 |
aaagatacataaaatcaaatatttggtatattcaagagaagggtataaacaaaagtaaagctcgaatatttatcttttgagttttttttttctttccttt |
21549283 |
T |
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| Q |
209 |
ctttatgaaacctaattgaagaacccttgttgatttacctgttgatgccaattggctggatccatat |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21549282 |
ctttatgaaacctaattgaagaacccttgttgatttacctgttgatgccaattggctggatccatat |
21549216 |
T |
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