View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9355_high_1 (Length: 315)
Name: NF9355_high_1
Description: NF9355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9355_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 8811845 - 8811542
Alignment:
| Q |
1 |
tgaggatgaattagggctaacatgccagctt-acaagtgtagcttttctaataaaggattaaaattaatggccattgactaacttttt-atacttactct |
98 |
Q |
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| T |
8811845 |
tgaggatgaattagggctaacataccagcttgacaagtgtagcttttataataaaggattaaatataatggccattgactaacttttttatacttactct |
8811746 |
T |
|
| Q |
99 |
aggagaaccaacaaatccctcttacacacaca--tacactatttttctcatactcttgtcgtgtcagtgttgtgaggggtatgttctatattttctttgg |
196 |
Q |
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| T |
8811745 |
aggagaaccaacgaatccctctcacacacacacatacactatttttctcatactcttgtcgtgtcagtgttgtgaggggtatgttctatattttctttgg |
8811646 |
T |
|
| Q |
197 |
agggtgcaagtgtattgaggtagtcgggtcgttgaaggtttgctatgtatcgtagaaattttcacagataatgttgaatctagcgagagaaagcctcgtg |
296 |
Q |
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| T |
8811645 |
agggtgcaagtgtattgagatagtcgggtcgttgaaggtttgctatgtgtcgtagaaattttcacggataatgttgaatctagcgagagaaagcctcgtg |
8811546 |
T |
|
| Q |
297 |
attg |
300 |
Q |
| |
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|||| |
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| T |
8811545 |
attg |
8811542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 54570482 - 54570537
Alignment:
| Q |
1 |
tgaggatgaattagggctaacatgccagctt-acaagtgtagcttttctaataaag |
55 |
Q |
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| T |
54570482 |
tgaggataaattagggctaacatgccagcttgacaagtgtagcttttataataaag |
54570537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 54570917 - 54570975
Alignment:
| Q |
1 |
tgaggatgaattagggctaacatgccagctt-acaagtgtagcttttctaataaaggat |
58 |
Q |
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| T |
54570917 |
tgaggataagttagggctaacatgccagcttggcaagtgtagcttttataataaaggat |
54570975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27120073 - 27120127
Alignment:
| Q |
1 |
tgaggatgaattagggctaacatgccagctt-acaagtgtagcttttctaataaa |
54 |
Q |
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| T |
27120073 |
tgaggatgaattagggctaacatgtcagcttggcaagtgtagcttttataataaa |
27120127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 25841210 - 25841265
Alignment:
| Q |
1 |
tgaggatgaattagggctaacatgccagctt-acaagtgtagcttttctaataaag |
55 |
Q |
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|||||||| |||||||||||||||| ||||| ||||||||||||||| ||| |||| |
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| T |
25841210 |
tgaggatggattagggctaacatgctagcttgacaagtgtagcttttataaaaaag |
25841265 |
T |
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