View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9355_low_10 (Length: 230)
Name: NF9355_low_10
Description: NF9355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9355_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 5313619 - 5313833
Alignment:
| Q |
1 |
cagataactgattaatgcttgacaaacttcaaatgacatgtctggtatgtttatagtagttggttgttcctttttcttctcagaaattacaaacatgcgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5313619 |
cagataactgattaatgcttgacaaacttcaaatgacatgtcaggtatgtttatagtagttggttgttcctttttcttctcagaaattacaaacatgcgt |
5313718 |
T |
|
| Q |
101 |
tctaaaactgctgactgtgcaccaagaacacatttatgagctcttatgcttttattttatcagatgcaccgaccttaatcacgacgtctgttaagacatc |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5313719 |
tctaaaactgctgaccatgcaccaagaacacatttatgagctcttatgc-----ttttatcagatgcaccgaccttaatcacgacgtctgttaagacatc |
5313813 |
T |
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| Q |
201 |
caatcttaacgctcgagcga |
220 |
Q |
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|||||||||||||||||||| |
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| T |
5313814 |
caatcttaacgctcgagcga |
5313833 |
T |
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